Brassica rapa (field mustard): 103828020
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Entry
103828020 CDS
T03449
Name
(RefSeq) 5'-3' exoribonuclease 2
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03008
Ribosome biogenesis in eukaryotes
brp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
103828020
09123 Folding, sorting and degradation
03018 RNA degradation
103828020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
brp03021
]
103828020
03019 Messenger RNA biogenesis [BR:
brp03019
]
103828020
03009 Ribosome biogenesis [BR:
brp03009
]
103828020
03016 Transfer RNA biogenesis [BR:
brp03016
]
103828020
Transcription machinery [BR:
brp03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
103828020
Messenger RNA biogenesis [BR:
brp03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
103828020
Ribosome biogenesis [BR:
brp03009
]
Eukaryotic type
Pre-60S particles
RNases
103828020
Transfer RNA biogenesis [BR:
brp03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
103828020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
103828020
NCBI-ProteinID:
XP_009101845
LinkDB
All DBs
Position
A06:complement(28734938..28741437)
Genome browser
AA seq
981 aa
AA seq
DB search
MGVPSFYRWLIERYPLILQDAIEEEALDVKVPVDTSKPNPNGGVEYDNLYLDMNGIIHPC
FHPEDRASPTTFSEVFQCMFDYIDRLFLMVRPRKLLFLAIDGVAPRAKMNQQRSRRFRAA
KDAAEAAAEEERLRQEFESEGKRLPPKLDSQVFDSNVITPGTEFMSTLSFALQYYIHVRL
NSDPGWKNIKVILSDANVPGEGEHKIMSYIRLQKNHPGYNPNACHCLYGLDADLIMLALA
THEVHISILREVVFTPGQQDKCFLCGQLGHRAADCEGKTGDLSDKAESDVVAKKPYQFVN
IWTLREYLEHDMQIPNSQLQKNLDRIIDDFIFICFFVGNDFLPHMPTLEIREGAIELLMS
VYKKEFGSSTSYLSNGSKLNLKNVEHFIQAVGLYENNIFQRRAQNHQRQSERFSRDRAKS
SRNCNYDPVVQLDSLVEVSDSLRPSLDDNTSVETEYNIQEEVDNREELKFKLKKLLREKS
DGFISGKGEEDKVRLGVQGWRERYYEEKFIAKTIEEMKQIRRDVVLKYTEGLCWIMHYYY
HGVCSWNWFYPYHYAPFASDLKFLDKLDIKFELGSPFKPFNQLLAVLPSASAHALPECFR
KLMTDPSSPIAEFYPPDFEIDMNGKRYSWQGIAKLPFIEEQRLLDAAAKVEHSLTNEEVR
RNSVLSDMLFVVSSHPLAELIRSLSSRTIKLSNKERAAVTEKIDPGLSEGMNGYLALCGG
DSQPSCFSSPIEGMEDVLANQVICAIYKLPDDLRGSDIARPPPGVVLPKKTVQLADLKGG
ANLWHEDGDRRRAPAKIIKIKRYNPKGSISGVRLRKAAHRLVLQTISSQPDNTHINSEPA
LCPNTIFHNNQVSRNVPSPRGSAVQRKHPQSELALKKNRIHQSEVTEEEKTAIRKRKEKE
KRGRYKANRRERAKNEQQANKGESNLDNKRPRSEVNEENRLEHKRPRFTEGKEQNTCAQS
ELTEEKNAKRKRMEKEKKREI
NT seq
2946 nt
NT seq
+upstream
nt +downstream
nt
atgggagtaccgtcgttctacagatggttaattgagaggtatccactgattttgcaagat
gccatcgaagaagaagctctcgacgtcaaggttccggtcgacactagcaaacctaatcct
aacggcggcgtcgagtatgacaatctgtacctcgacatgaacggaatcattcatccttgt
ttccatcctgaagacagggcttctccaacaacgttttcggaggtgtttcaatgcatgttc
gattacattgacagacttttcctcatggttcgacctcgcaagctattgtttttggctatt
gatggtgttgctccaagggctaagatgaatcaacaaagatccagaaggtttcgagctgca
aaagatgcagcagaggccgctgctgaagaagagcgactgcgtcaagagtttgagagtgaa
ggcaagaggttgcctcctaaactggactctcaagtttttgactctaatgttatcactcct
ggaaccgagttcatgtctactctttcctttgccttgcaatactacattcacgttagactt
aactctgaccctggctggaaaaatattaaggttatcctctcagatgctaatgttcctggt
gagggggaacacaagatcatgtcttacattcgtcttcaaaagaaccatcctggttacaac
cccaacgcctgtcattgtctgtatggtttggacgccgacttgattatgctggctttggcc
acacacgaagttcatatttcaatccttcgtgaggttgttttcactcctggacaacaagac
aaatgcttcttgtgcggtcagctcgggcaccgagctgcagattgtgaggggaagacagga
gatttgtctgataaagctgagtcagatgttgtggctaagaagccataccagttcgtcaat
atctggacgcttcgagagtatttggagcacgacatgcagatacctaactcgcaattgcaa
aaaaatttggaccgcataattgatgacttcatctttatctgtttttttgttggcaatgat
ttcctgccacatatgcctacactggagatacgggagggtgctatagaattacttatgtcc
gtgtacaagaaggaatttggatcaagtacaagttacttaagcaatggaagcaagctgaat
ttaaagaatgtggagcattttatccaggccgttgggctctatgaaaataatatatttcaa
agaagagcacaaaaccatcagaggcaatcggaaaggtttagtcgtgaccgagctaaatcg
agcagaaattgtaactatgacccggttgtgcaactagattctctagttgaagtgtccgat
tcattgcgtccgtctcttgacgataacactagtgtggaaacagagtataacatccaagaa
gaagtagataacagagaagaattgaagtttaagcttaagaaacttttgcgggaaaaatca
gatgggttcatttcagggaaaggcgaagaagataaggtgaggctaggtgtacaaggatgg
agggagagatactacgaggagaagttcatagctaagactatagaggaaatgaaacaaata
cgcagagatgttgttttgaagtatacagaaggtctttgttggataatgcattactattat
catggtgtttgttcatggaattggttttatccttatcattatgcacctttcgcatctgat
ctcaagttccttgataagctagatattaagttcgaactaggttccccatttaaaccattc
aatcagcttctggcagttcttccatctgcaagtgcacatgctctcccagaatgttttagg
aaactgatgacagatccaagttcacctatagctgagttttatcctcccgattttgagatt
gacatgaatggaaagcgctattcttggcagggtatagcaaaactgccttttatagaagaa
cagcgtcttctggatgcagccgcaaaagtggagcactcactgacgaacgaagaagttcga
agaaacagtgtgctgtctgacatgctctttgtggtttcatctcatccgcttgctgagctc
atccgttctcttagtagccgtactattaaattgagcaacaaagaacgagcagcagttacg
gaaaaaattgaccctggactaagtgaagggatgaatggttacttggctttatgtggtgga
gatagtcagccttcatgcttcagctcccccatcgaggggatggaagatgtattagccaat
caagtgatttgtgccatatacaaacttccagatgatcttagaggaagcgacattgctcgt
ccacctccaggagtggtgttgcctaaaaagactgtacaactagcggatttgaaaggtgga
gctaatctatggcatgaagatggtgatcgaagacgagctcctgcaaagattataaaaatc
aagaggtacaacccaaaaggatccatttcgggggttaggcttaggaaggcagcgcacaga
cttgtgttacagacgataagttcccaaccggataatacgcacatcaactccgaaccagca
ttgtgtccgaatactatattccacaacaatcaggtgtcgagaaatgtcccatcaccccga
gggagtgcggtgcagaggaaacaccctcagagtgaattagcgttgaagaaaaacagaatc
catcaaagtgaagtcaccgaggaggagaagacagcaatcagaaagcgtaaggaaaaggag
aaaagagggagatataaggctaacagaagggagagagcgaagaatgagcagcaagcaaac
aaaggagaaagcaatctggataacaaaaggcctcgaagtgaagtcaatgaggagaacaga
ctggaacacaaaaggcctagattcactgaggggaaggaacagaacacatgcgctcaaagc
gaactcactgaggagaagaatgccaaacgaaagcgtatggagaaggagaaaaaaagagaa
atttag
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