Brassica rapa (field mustard): 103828556
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Entry
103828556 CDS
T03449
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103828556
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brp03019
]
103828556
Enzymes [BR:
brp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
103828556
Messenger RNA biogenesis [BR:
brp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
103828556
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
DUF1965
Motif
Other DBs
NCBI-GeneID:
103828556
NCBI-ProteinID:
XP_009102413
UniProt:
M4DF54
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All DBs
Position
A07:complement(7913907..7916561)
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AA seq
616 aa
AA seq
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MSMLLKMQRRFLSASAGNSKTLNHRRWSVKQVTKSNFKSSLDEFRSSIESSDFVALSLQN
TGSHAAAWHRVSAIDTPQTSYLKAKYAAERYQIFQFALCPFSLRGSKLTLHPYNFYLFPR
DELKLGMPSYSFSCQASRLTAMAREGFDFNTCIYEGISYLSREQESASKFLSGNPILPDP
ITVPSSPSTVADTVFVGRIRSRVKNWRQSCIDSSSKTGDDDLVSSLRKLVLGSEQYGSRL
CLTIDVCSERQVQLILEMLTEFSDDVVPLLVASKSRGTQAVRTVFMSSKEDKDLFKKELQ
DLENEENRRVRGFREVVDLISSSQKPVVSQNYLSDFTSIHAKFLGPLPSNVDDFSSSLSP
AFPKVVDLSQLMKEISPLSNISNLPAAMSSLNRFFAPVDVEVANQGCVVKPDEGHQMHGQ
NVVMISQLFAKLSTIQKSDKSPAQSNEDLQALDSAEHANSITSNDENVKVWSKNSGRVSS
ENLVFIWGVSKKMTAAMLKNVLQKSHAVFAREFDVKYLDRSCAVVVFWESGSSETFLREV
NNEEQLVGSLREMAAEGLRVAGYETYRRACRLGFWEAELAEALDKTLESSDTDLDSDTKP
SDISWSSELTINFDEL
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgtcgatgctgctgaaaatgcaaaggcgcttcctttccgcttccgccggcaatagtaaa
accctaaatcatcggagatggagtgtgaagcaggtcacaaaatccaacttcaaatcctct
ctcgatgagtttcgctcttccatcgaatcttcggacttcgtagccctctccctacagaac
accggctcccacgccgccgcctggcaccgtgtctccgccattgatacacctcagacgagt
tacctcaaggctaaatacgccgccgaacgctaccagatcttccagttcgctctctgcccc
ttctcccttcgcggctccaagctcacccttcacccatataacttctatttgtttcctcga
gatgaattgaagttagggatgccttcttatagcttctcttgtcaagcttctcgtttaacg
gccatggctagggaagggtttgatttcaacacctgtatctatgaagggatctcatacttg
tccagagaacaagaatctgcgtccaagtttctctcagggaatccgattttacctgatccc
atcactgtaccttcttctccatccactgtagctgataccgtctttgttggaaggataagg
tcacgcgtcaagaactggagacagtcttgtatcgactccagctcaaagacaggagatgat
gatttggtgagctctctgaggaaactggtgctggggagtgagcagtatggttcaaggcta
tgtttgactattgatgtttgtagtgagcgccaagtgcaactcatcttagagatgttgacc
gagttctctgatgatgttgtccctctactcgttgcttctaagagcagaggaacacaagca
gttcgtactgtcttcatgagttcgaaggaggacaaggatctttttaagaaagagcttcaa
gatcttgaaaatgaagagaacaggcgagttcgtggcttccgagaagtggttgatttgatt
tcttcttcacagaaacctgttgtttctcagaattatcttagcgatttcacttccattcat
gccaagttcttaggccctctaccttcaaatgttgatgacttcagcagttcactgagccca
gcttttcccaaggtcgtggatctcagtcaactcatgaaagaaattagccccttaagtaat
ataagtaatcttcctgcagctatgtcctccttgaatcggttctttgctcctgtggatgtg
gaagtagcaaatcaaggatgtgtggtcaaaccagacgaaggccatcagatgcatgggcag
aacgttgtgatgatatctcagctttttgctaaactaagtaccatacagaaatcagataaa
tcccctgctcaatcaaatgaagatctccaagctttggattctgctgaacatgcgaattca
atcacctcaaacgatgaaaatgtcaaagtctggtcaaagaacagcgggagagtaagctct
gagaatttggtgttcatatggggagtgtcgaaaaagatgacagctgcaatgctgaagaat
gttctacaaaagtcacacgctgtttttgcgcgagagtttgatgttaaatacttagacagg
agctgtgcggttgtggtgttttgggagtcaggttcctcggagactttcctccgggaggtt
aacaatgaagagcagcttgttggttctttaagagagatggccgcagaagggctaagagta
gcaggttatgagacttacaggagagcatgtagattaggtttctgggaggccgaattggca
gaagctttagataaaacattggaatcttcagatactgatcttgattcagacaccaaacca
tcagatattagttggtcgagcgagttaactatcaattttgatgagctatga
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