Brassica rapa (field mustard): 103828688
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Entry
103828688 CDS
T03449
Name
(RefSeq) probable pectate lyase 9 isoform X1
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp00040
Pentose and glucuronate interconversions
brp01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
103828688
Enzymes [BR:
brp01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
103828688
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GFIT
Motif
Pfam:
Pectate_lyase_4
SMIM5_18_22
Lectin_N
Beta_helix
Motif
Other DBs
NCBI-GeneID:
103828688
NCBI-ProteinID:
XP_009102560
UniProt:
M4DES8
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All DBs
Position
A07:9113922..9116719
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AA seq
447 aa
AA seq
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MASSSQKLTSACFVVLLIFVVCVLTATNLRNNQVSLSRKLKTEDSHSFNNSTIAIRREGV
ELNEHAVADPDQVALLQTNEQNITERRKLGFFSCGNGNLIDDCWRCDPNWHMNRKRLADC
GMGFGSNATGGRDGRFYVVTDPTDEDMEFPRSGTLRHAVIQVEPLWIIFKRDMVITLKQE
LIMNSYKTIDARGANVHVANGACITIQGITHVIVHGLHIHDCIRTGNAMVRSSPSHYGMR
NMSDGDAVSIYASSHIWIDHNSLSKCADGLVDVVMGSTAVTISNNHLTHHNEVMLLGNND
LYTQDKNMKVTIAYNHFGEGLRQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQG
NRYAAPKNRYAKQVTKRVRTEKSEWKKWNWRSEGDMLVNGAFFIQSGEGATANYESASSL
AAKPASMVGSITSTAGALGCRSGKPCY
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcatcgtctcagaaactgacgagtgcttgtttcgtcgtactcctcatctttgtc
gtatgcgttctcacagcgacgaatctccggaacaaccaagtctctctgtcgagaaaactg
aaaacagaggattcgcatagctttaacaattcaacaattgcgatcaggcgtgaaggtgtg
gagttgaatgaacacgcggttgctgatcccgaccaggttgccctccttcagacgaacgaa
caaaacattaccgaaaggaggaagcttggtttcttctcctgtgggaatggcaatctaata
gacgattgttggcgctgtgaccctaactggcacatgaaccgtaaacgcctcgccgattgt
gggatgggttttggtagtaacgccactggtggtcgtgacgggcgtttctacgtcgtcact
gatccaaccgacgaagacatggagtttcccaggtcaggtactctacgccacgccgtcatc
caagttgagccactatggattatcttcaaaagagatatggtgataaccttgaaacaagag
ctgattatgaatagttacaagactattgatgctcgcggtgctaacgttcacgtagccaat
ggtgcttgcatcaccattcagggtataacccacgtcatcgttcatggtctgcacattcat
gattgtataagaactgggaacgcaatggtcagaagctcgccttctcattatggaatgagg
aatatgtctgatggtgatgctgtttcaatatatgcgtcaagtcatatctggattgaccac
aactctctctctaagtgtgctgatggtctcgttgatgttgtcatgggttccactgccgtt
accatttccaataaccatctcactcaccacaatgaggtcatgttgctaggaaacaatgat
ttgtacacacaagacaagaatatgaaagtgaccattgcgtataaccattttggcgaggga
cttagacaaagaatgcctagatgcaggcatggatatttccatgtggtgaacaacgactac
acgcattgggaaatgtacgctattggaggaagtgcaaacccaactataaacagtcaaggc
aatagatatgctgctcccaagaaccgctatgcaaaacaggtcacaaaaagggtgaggaca
gagaaaagtgagtggaagaagtggaactggagatcagaaggagacatgctagtgaacgga
gcatttttcatacaatcaggggaaggagcaacagcaaactatgaaagtgcctcgagctta
gcagctaaaccagcttctatggtcggctcaatcacttctactgcaggtgcacttggttgc
cgcagtggcaaaccttgctactaa
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