Brassica rapa (field mustard): 103829199
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Entry
103829199 CDS
T03449
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9 isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103829199
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brp03019
]
103829199
03041 Spliceosome [BR:
brp03041
]
103829199
03009 Ribosome biogenesis [BR:
brp03009
]
103829199
03016 Transfer RNA biogenesis [BR:
brp03016
]
103829199
Enzymes [BR:
brp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103829199
Messenger RNA biogenesis [BR:
brp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
103829199
Spliceosome [BR:
brp03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
103829199
Complex C
U4/U6.U5 tri-SnRNP related factors
103829199
Ribosome biogenesis [BR:
brp03009
]
Eukaryotic type
Pre-60S particles
Helicases
103829199
Transfer RNA biogenesis [BR:
brp03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
103829199
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
ResIII
DEXQc_Suv3
Helicase_C
ATPase_2
nSTAND3
Motif
Other DBs
NCBI-GeneID:
103829199
NCBI-ProteinID:
XP_009103109
LinkDB
All DBs
Position
A01:complement(17950240..17955044)
Genome browser
AA seq
988 aa
AA seq
DB search
MGSVKRKSLEESTDCAPPQKVQREDDSTQIINEELVGCVHDVSFPENYVPTPAQADNKPP
AKEFPFTLDSFQSEAIKCLDNAESVMVSAHTSAGKTVVASYAIAMSLRENQRVIYTSPIK
ALSNQKYRDFKEEFSDVGLMTGDVTIDPNASCLVMTTEILRSMQYKGSEIMREVAWIIFD
EVHYMRDSERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWVAKVHKQPCHIVYTDYR
PTPLQHYVFPAGGSGLYLVVDEKAKFHEDSFQKSLNALVPANDGDKKRENGKSQKGLILG
KIGEESDIFKLVKMIIQRQYDPVILFSFSKKECEALAMQMSKMDLNSDDEKDSVETIFTS
AIDMLSDDDKKLPQVSNILPILKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFS
IGLNMPAKTVVFTNVRKFDGDKFRWLSSGEYIQMSGRAGRRGIDKRGICILMVDEKMEPA
VAKSMLKGSADSLNSAFHLSYNMLLNQLRSEDGDPENLLRNSFFQFQADRAIPDIEKQIK
ALQEERDSMVIEEEESLRNYYNLILQYKSLKKDIREIVFSPKYCLPFLLPNRAVCLDCPN
DNGEQQSFSIEDQDAWGVIMKFNKVKSLSEDDDNRRPEDANYTVDVLTRCLVSRDGAGKK
KIKPVPFKERGDPVVVSVPLSQIKSLSSAIMNIPKDYSQLEARENALKKVSELLSRHPDG
IPLDPEVDMKIRSSSYKKTVRRLEALENLFEKHKVAKSPLIAQKLKVLHMKEELTAKIKS
LKKTVRSSTALAFKDELKARKRVLRRLGYITSDNVVELKGKVACEISSAEELTLTELMFS
GVFKEAKVEELVSLLSCFVWRERLPDAAKPREELDLLFIQLQDTARRVAEVQLDCKVDID
VESFVHSFRPDIMEAVYAWAKGSKFYEIMEIARVFEGSLIRAIRRMEEVLQQLIVAAKSI
GETQLEAKLEEAVSKIKRDIVFAASLYL
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
atgggttccgtgaagagaaaatctctggaggaatctactgactgtgctccgccgcagaaa
gtccaaagagaagacgattccacgcagatcatcaacgaagagctcgtgggttgcgttcac
gacgtttccttccctgaaaattacgttcctacccccgctcaagcagacaacaaacctccc
gctaaagaattccctttcacccttgactccttccagtctgaagctatcaagtgcctcgat
aatgctgaatctgtcatggtttcagctcacacatctgctggtaaaacagtagttgcatct
tatgcaattgccatgtccttgagggagaaccagagggttatttacacttctcctataaag
gcactcagcaatcagaagtacagagattttaaggaagagttttctgacgttggtttgatg
actggggatgtgaccattgatcctaacgcctcctgtctggtcatgaccactgagatcttg
cgtagcatgcagtataaagggtctgagattatgagggaggttgcttggattatttttgat
gaggtccattacatgcgtgacagtgaaagaggtgtggtttgggaagaaagtattgttatg
gctcccaagaattctcgttttgtgtttctttctgccactgttcccaatgccaaggagttt
gctgattgggttgcaaaggttcacaaacaaccatgccatattgtttacaccgattatcgg
ccaactccgcttcagcactatgtctttcctgccggagggagtggcctttatttggttgtg
gatgaaaaggctaaattccatgaagatagctttcaaaaatctcttaacgcactcgttcct
gctaatgatggtgacaagaaaagagaaaatgggaaatctcaaaagggcttgatacttgga
aaaattggtgaagaaagtgatatcttcaaattggtgaaaatgattattcagcgccagtat
gatcccgtgattttgttcagtttcagcaaaaaggaatgcgaggcacttgctatgcagatg
tctaagatggatttaaacagcgacgatgagaaagactccgtggagacaatctttactagt
gcaatcgatatgctttcagatgatgataagaagctacctcaggtgtcaaatattttaccc
atcttaaaacgtggtatcggcgttcatcattcgggcttgcttccaattttgaaagaagta
attgagatattatttcaagaaggtctgattaagtgtttgtttgcaacagagacatttagt
attggattgaacatgccagcaaagacggttgtgtttacaaatgtacgcaagtttgatgga
gacaagttccggtggctatctagtggagagtacattcaaatgagtggtcgcgctggacgt
cgaggtattgacaaacgaggtatctgcatcctcatggtggatgagaaaatggaacccgct
gttgctaaatcaatgctcaaaggaagtgctgattctttgaacagtgccttccatttgagc
tataacatgcttctaaatcagttgcggagtgaagatggtgatcccgagaatcttctccgc
aattctttctttcagtttcaagctgaccgtgctatcccggatatcgagaagcaaataaaa
gccctgcaagaagagagagactctatggttattgaagaagaagaaagcttaaggaattac
tataacctgattttgcagtataagagcctgaagaaggatatacgtgaaattgtgttctct
ccgaagtactgtttaccctttttgctgccgaacagagctgtttgtctcgattgcccaaat
gataatggagagcaacaatcattcagcattgaagaccaggatgcgtggggagtgataatg
aaattcaacaaagtcaaaagcttatctgaagatgatgataatagaagaccagaggatgca
aactataccgtagatgtactgaccagatgtttggtcagcagagatggcgctggcaaaaag
aaaattaaacctgtgccatttaaggaacgtggtgatcccgttgtcgtctctgtaccttta
tctcagattaagagtttaagcagtgcaattatgaatatacctaaagactattcacaattg
gaagctcgagagaatgctctgaagaaggtttctgaattactctcgagacatcctgatgga
atacccctggatcctgaagttgatatgaagattcggagcagctcttacaaaaagacagtt
cgtcggctggaggctctagaaaacctatttgaaaaacacaaagttgcaaaatctcctctg
atagcgcagaagctgaaagttctacacatgaaggaagagctaacagccaagattaaatca
cttaagaaaactgtccgatcttcaacagcattggcgtttaaagatgaacttaaggccaga
aagcgtgttttgcgaaggctaggatacatcacaagcgacaatgttgtggagttgaagggg
aaagttgcatgtgaaatcagtagtgcagaagaattgacactaacggagctaatgttcagt
ggtgtcttcaaggaagcaaaggtggaggagctggtttctctcctctcttgctttgtgtgg
cgagagaggctccctgacgcagctaaacccagagaagaactcgacttactcttcatacag
ttacaagacacagccaggcgtgtagctgaagttcagcttgactgcaaggtcgatatcgat
gtagagagttttgtgcattcgttcagaccggatataatggaggcggtgtatgcgtgggca
aaaggctccaagttttacgagatcatggagattgctcgtgttttcgaagggagcttgatc
agagcgataaggagaatggaggaagttctacaacagctcatcgtagctgcaaaatccata
ggtgaaacacagcttgaggctaaacttgaagaagctgtttccaagatcaagagagacatt
gtgttcgctgcatctctctacttgtga
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