Brassica rapa (field mustard): 103829698
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Entry
103829698 CDS
T03449
Name
(RefSeq) NPC intracellular cholesterol transporter 1
KO
K12385
Niemann-Pick C1 protein
Organism
brp
Brassica rapa (field mustard)
Pathway
brp04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
103829698
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
103829698
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
brp02000
]
103829698
Transporters [BR:
brp02000
]
Solute carrier family (SLC)
SLC65: NPC-type cholesterol transporter
103829698
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NPC1_N
Sterol-sensing
NPC1_MLD
Patched
Folate_rec
MMPL
Motif
Other DBs
NCBI-GeneID:
103829698
NCBI-ProteinID:
XP_009103636
UniProt:
M4D678
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All DBs
Position
A07:complement(15681668..15690241)
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AA seq
1255 aa
AA seq
DB search
MKIVPSLILLLLILYGVEARKSAGYCAMYDICGARTDGKVLNCPYNIPAVKPDDLFSSKI
QSLCPTITGNVCCTETQFDTLRSQVQQAIPFVVGCPACLRNFLNLFCELTCSPDQSLFIN
VTSTAKIKNNSTVDGIQYYITDAFGEGMYESCKNVKFGSSNSLAVDFLGGGAKNFKEWFT
FIGQKAGVNMPGSPYGIKFLPMPPASSGMKPMNVSSYSCSDDTLGCSCGDCPSAAACSST
SAPPAQKQRSCSIKIGSLEAKCVDFVLAILYIVLVSLFLGGGLIHRIKGKKKSSPSSSEP
RGEQSSVKPDTIHAQMLQNTPQRNWAQLSTVQGYLARFYSKYGIWVARHPALVLIVSVFL
VLLLCVGLIRFKVETRPDKLWVGAGSRAADEKRFFDTHLAPFYRIEQLIIATAPKSSQPE
ILTDDNIKLLFDIQKKVDGLRANHSGSMVSLTDICMKPLGEDCATQSLLQYFQMIPKNYD
EFGGVEHVKYCFEHFTSSESCLSAFKGPLDPTTALGGFSGNSYSEASAFIVTYPVDNAVD
NKGNRTVRAVAWEKAFIQLAKDELLPIVKSKGLTLSFSSESSIEEELKRESTADVITIAI
SYLVMFAYISLTLGDTPRLNSFYITSKVLLGLSGVLLVMLSVLGSVGFFSAIGMKSTLII
MEVIPFLVLAVGVDNMCILVHAVKRQEQELPLERRVSNALMEVGPSITLASLAEILAFAV
GAYIKMPAVRVFSMFAALAVLLDFILQITAFVALIVFDFKRAEDKRVDCFPCIKRAQSSD
GDDKGVGQKKPGLLTRYMKEVHAPILSHWAVKIVVIAFFFGLAMAGIALATRIEPGLEQQ
IVLPQDSYLQDYFNNIATYLRIGPPLYFVLKNYNYSSESRHTNQLCSINKCDSNSLMNEI
AKASLTPELSYIAKPAASWVDDFLVWLSPEAFGCCRKFTNGTFCPPDDQPPCCPADQACG
LSEVCKDCTTCFRHADLTSDRPSTIQFKEKLPWFLSALPSADCAKGGYGAYSTSVDLKGY
KSGIIQASSFRTYHTPLNKQADFVNSMRAAQEFSSKISRSLQMEIYPYSVFYMFFEQYLD
IWKTALINLSIAIAAVFAVCLIITCSFWSSAIILLVIAMIIIDLLGVMAVFHIQLNALSV
VNLIMSVGIAVEFCVHITHAFSISSGDRNQRMKEALGGMGASVFSGITLTKLVGVIVLGF
SKSEVFVVYYFKMYLALVLLGFLHGLVFLPVFLSMFGPAPKGDKQDHRPSASSQP
NT seq
3768 nt
NT seq
+upstream
nt +downstream
nt
atgaagattgttccatctcttatccttctcctcctgattctgtatggagtagaagcaaga
aaatcagcaggatattgtgcgatgtatgatatctgtggagcacgaaccgatggaaaagta
ctgaactgcccttataacattcctgctgtgaagcccgatgatttgttctcttcaaagata
caaagcttgtgcccaaccatcacaggcaacgtttgctgcactgagactcagttcgatacg
ttacgttcacaagtccaacaggctattccctttgttgtaggctgtccagcatgcttgagg
aactttctgaatcttttttgtgaacttacttgctctcctgatcaaagtctatttataaac
gtcacttccaccgcaaagataaagaataactcgaccgtggatgggattcagtactacata
accgatgctttcggagaagggatgtatgaatcctgcaagaatgtgaagttcggtagctcg
aacagtctagctgtagattttcttgggggcggtgcaaagaactttaaggagtggtttacg
tttatcggccagaaagctggtgtgaatatgccaggctccccctatgggatcaaatttttg
ccgatgccaccagcgtcatctggaatgaagcctatgaatgtgtcttcttattcatgcagt
gatgacactcttggatgctcttgtggtgattgcccttctgcagctgcttgttccagtaca
tcagcacctcctgctcagaaacaacgttcttgctcaatcaagattggttcacttgaggcc
aaatgtgttgatttcgtgctagccattttgtatattgtcttggtttcgttgtttcttgga
ggaggtttgattcaccgaataaagggtaagaaaaagagctcaccatcatcgtcagagccc
agaggagaacaaagttctgttaaaccagacactattcatgcgcagatgctacaaaacact
ccacagaggaactgggctcagctgtcaacagtacaaggatacttggccagattttacagc
aagtatgggatctgggtagcaagacacccagctcttgttttgattgtgtcagtcttttta
gttcttctactttgtgtgggtctgatccgattcaaagttgagacacggcctgataagcta
tgggtaggtgcagggagcagagctgctgatgagaaacgattctttgacacccatcttgct
cctttctacagaattgaacagctaataatagcaacagctccaaaatcttctcagccggaa
attttgacagatgacaatattaagttactttttgacatacagaagaaggttgatggactc
cgggcaaatcactcaggttcaatggtttctctgacagacatttgcatgaaaccacttgga
gaagactgtgccacacagagtcttctgcagtatttccagatgataccaaaaaattatgat
gaatttggaggtgtagagcatgttaaatattgctttgagcatttcacctcgtcagaatca
tgtttgagtgcgtttaagggtccccttgatccaacaactgcactaggagggttctctggg
aacagttacagtgaggcttctgcttttattgtgacttatcctgtggacaatgctgttgac
aacaaaggtaacagaacagtgagagcagtggcttgggagaaagcctttatccagctcgcc
aaggatgagttgttgccaattgttaaatcaaaaggcttaactctttctttctcttccgaa
agttctattgaagaagaacttaaaagagaaagcacagcagatgtcatcactatagccata
agttatcttgtcatgtttgcatatatatcactgacacttggggatacacctcgtttgaat
tccttttacattacatccaaggttttgcttggtctatctggtgttcttcttgtcatgctg
tctgtcctcggctccgtaggatttttcagtgccattggaatgaaatctactctaatcata
atggaagttataccatttcttgttttggctgtcggtgttgataatatgtgcatactggtt
catgccgttaagaggcaagagcaagagctgcctctggagagacgagtaagcaatgccctt
atggaagttggaccatcgattacgcttgcaagtctagccgagattttagcttttgctgtt
ggtgcttatattaaaatgccagctgttcgagtcttctccatgtttgctgcattggccgtc
cttttggacttcattctccagattactgcttttgttgccttgatagtatttgacttcaaa
cgtgctgaggataagcgagttgattgcttcccatgtattaagagagcacaatcatcagat
ggtgatgataaaggggttggtcagaaaaagcctggacttttgactcgatatatgaaggaa
gtccatgcacctattctcagccattgggcagtcaaaatagtggttattgccttcttcttt
ggcttagcaatggctggaattgcattggccactcggatagagcctggtttggagcaacag
attgttcttcctcaggactcatatcttcaggattacttcaacaatattgctacatatctt
cgaattggtccacctctttactttgttctgaagaattataactacagctcggaatcaaga
catacaaatcaactttgttccattaacaagtgtgattctaattctcttatgaatgagatt
gcaaaggcttctttgaccccagaactaagctacatagctaagccagctgcttcatgggta
gatgactttcttgtgtggttatctcccgaggcatttggctgttgccgaaagtttacaaat
ggtaccttttgtccccctgatgaccagcctccttgttgccctgctgatcaagcttgtggc
ctaagtgaagtttgcaaagactgcaccacgtgctttcgtcatgctgatttaactagtgac
cgcccatctacaattcaattcaaagagaaacttccttggttcctcagcgcacttccttct
gctgattgtgctaaaggtggctatggtgcttattctactagtgttgatttgaaaggatat
aaaagtggtatcatacaagcttcatcgttccgcacttatcacacacctcttaacaagcag
gctgactttgttaattcaatgagagctgctcaagagtttagttccaaaatttctcgttct
ttgcagatggagatatatccatactcagtgttttatatgttctttgagcaatatcttgac
atatggaaaactgcattaatcaacctctccatagccatcgctgccgtctttgccgtgtgt
ttaatcatcacatgcagtttttggagctctgcgattattttgctggtgattgcaatgatc
atcattgatctcctgggagtaatggcagtctttcacatccagctaaacgcattatcggtt
gtgaatttaatcatgtccgtgggcatagcggttgagttttgtgtacacataacacatgct
ttctcgataagctctggggacagaaaccaacggatgaaagaggcgcttggtggcatggga
gcttcagttttcagtggaattacattgacgaagctagttggtgtgattgtgctgggcttc
tcaaaatcggaagtatttgtggtctactacttcaagatgtatttggcactagtcctcctc
ggtttcttgcacggtcttgtattcttaccggtgttcttgagcatgtttggtccagctcca
aaaggggataagcaagatcatcgaccttcggcttcatcgcaaccgtag
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