Brassica rapa (field mustard): 103829916
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Entry
103829916 CDS
T03449
Name
(RefSeq) cell division control protein 48 homolog D
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
brp
Brassica rapa (field mustard)
Pathway
brp04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
103829916
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brp03019
]
103829916
03009 Ribosome biogenesis [BR:
brp03009
]
103829916
04131 Membrane trafficking [BR:
brp04131
]
103829916
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
brp04147
]
103829916
Messenger RNA biogenesis [BR:
brp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
103829916
Ribosome biogenesis [BR:
brp03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
103829916
Membrane trafficking [BR:
brp04131
]
SNARE
SNARE associated proteins
Others
103829916
Autophagy
Aggrephagy
Other aggrephagy associated proteins
103829916
Exosome [BR:
brp04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
103829916
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
CDC48_2
AAA_2
AAA_5
AAA_33
AAA_22
TIP49
NPHP3_N
AAA_14
RNA_helicase
nSTAND3
Mg_chelatase
AAA_28
AAA_17
AAA_18
Parvo_NS1
ATPase_2
ABC_tran
IstB_IS21
Vps4_C
AAA_7
NACHT
NB-ARC
DUF815
TsaE
AAA_lid_PRS2_C
Zeta_toxin
Viral_helicase1
AAA_24
Motif
Other DBs
NCBI-GeneID:
103829916
NCBI-ProteinID:
XP_009103848
UniProt:
M4CFZ1
LinkDB
All DBs
Position
A07:17382383..17386627
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AA seq
810 aa
AA seq
DB search
MANQPESSDPKGAKRDFSTAILEKKKAVNRLVVDEAINDDNSVVSLHPDTMEKLQLFRGD
TVLLKGKKRKDTVCIALADDTCDEPKIRMNKVVRSNLRVRLGDVISIHQCPDVKYGKRVH
ILPLDDTIEGITGNIFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPDEYCV
VAPDTEIFCEGEPIKREDEERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVK
PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEGEKN
APSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPA
LRRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLAEDVDLERVSKDTHGYVGADLAALCT
EGALQCIREKMDVIDLEDEEIDAEILNSMAVTNEHFQTALGNSNPSALRETVVEVPNVSW
EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ
ANFISIKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGA
ADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRYQI
FKSCLRKSPVAKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIEKERKKAET
PEAMEEDEEEIAEIKASHFEESMKFARRSVSDADIRKYQAFAQTLQQSRGIGSEFRFPDA
TGTGGAAAMAGGADPFATTGGAAEDDDLYS
NT seq
2433 nt
NT seq
+upstream
nt +downstream
nt
atggcgaatcaacccgaatcatctgatccgaagggagcgaagagggactttagcaccgcg
attttggagaagaagaaggcggtgaatcgtttggttgtggatgaggcaatcaacgatgac
aactccgtcgtgtctctacaccctgacaccatggagaagctacagctctttcgtggagat
accgtcttactcaagggaaaaaagaggaaggatactgtgtgtattgctttagctgatgat
acatgtgatgaaccaaagattaggatgaacaaagttgttaggtcaaacctgagggttagg
ctcggagatgtaatctctatccatcagtgccctgatgtcaagtatgggaagcgtgttcac
atcttacccttagatgataccattgaagggattactggaaatatatttgatgcctacctt
aaaccttatttcctggaggcataccgcccggtgaggaagggtgatcttttcctagttaga
ggagggatgagaagtgttgagtttaaggttattgagaccgatcctgatgagtactgtgtg
gtggctccagacacagagatattctgtgagggtgaaccgataaagagagaggatgaggaa
aggttagatgaagttggttacgatgatgttggtggtgttaggaaacaaatggctcagatt
agagaacttgttgagctccctttgaggcatccacagctcttcaagtccatcggtgttaag
cctcctaaaggaatcttgctctatggccctcctggttctggcaagacactgattgctcgt
gctgttgctaatgagaccggtgcgtttttcttctgtatcaatggtccggagatcatgtct
aagctagctggtgagagtgaaagcaaccttaggaaagcgtttgaggagggtgagaagaat
gcaccttcgatcattttcattgatgagcttgattccatcgctccaaaacgagagaagacg
catggagaggttgagagaaggattgtctcacagctcttgacgcttatggatgggcttaaa
tcaagagctcatgtcattgttatgggagctaccaaccgtcctaacagcattgacccggct
ttgagaaggtttggaagatttgacagggagatagatattggtgttcccgatgagattggt
cgtcttgaagttctcaggattcacaccaagaacatgaagctcgcagaagatgttgatttg
gaaagagtatctaaagacacacatgggtatgttggtgccgaccttgcagcattatgcact
gaaggtgctctccaatgcatcagggagaagatggatgtgattgacctagaagatgaggag
atagatgctgagattctcaactctatggctgtgactaatgagcatttccagacagctctt
ggtaatagcaatccttctgctctacgtgagacggtcgttgaggtgccaaatgtttcttgg
gaagacattggtggtcttgagaatgtcaagagggaactacaagagactgttcaatatcca
gtggagcatcctgagaagtttgagaagtttggtatgtcaccgtctaaaggagtcctgttc
tacggtcctcctggttgtggaaagacccttttggccaaggccatcgccaacgagtgtcaa
gccaacttcatcagtatcaaaggccccgagctactcacaatgtggttcggagagagtgag
gccaatgtgagagagatattcgacaaagcacgccagtcagctccttgtgttcttttcttt
gatgagctagactccatcgccactcagagagggagcagcgttggagacgctggtggtgca
gcagacagagtattgaaccagcttcttacggagatggatggtatgtctgctaagaagact
gtcttcattattggagcaacaaacagaccagatatcatcgaccctgcgcttcttcgtcct
ggtcgtcttgatcagctcatctacattcctcttcctgatgaggagtctcgttaccagatc
ttcaagtcttgcttgaggaagtctccagtggctaaggatgttgacttaagggctcttgcc
aagtacacacaagggttcagcggtgcagacatcacagagatttgtcagcgtgcttgcaag
tacgccatcagagagaacatcgagaaggatattgagaaggagaggaagaaagcagagaca
ccagaagcaatggaagaggacgaggaggagatcgcagagatcaaagctagtcattttgaa
gaatcaatgaagtttgcgaggagatcagtgagtgatgcagacatacgcaagtatcaggct
tttgctcagactctccagcagtcacgtgggattgggagtgagttcaggttccctgacgcg
acagggactggaggtgcagccgccatggctggtggagctgacccgtttgctactacggga
ggagcagccgaggacgatgatctctatagttaa
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