Brassica rapa (field mustard): 103829999
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Entry
103829999 CDS
T03449
Name
(RefSeq) probable pectate lyase 13
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp00040
Pentose and glucuronate interconversions
brp01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
103829999
Enzymes [BR:
brp01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
103829999
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
103829999
NCBI-ProteinID:
XP_009103942
UniProt:
M4CG67
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Position
A07:17772319..17776642
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AA seq
491 aa
AA seq
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MHPPHFSISILLLCLFFFTLLEATKPLNLTLPHQHPSPDSVALHVTSTINASLSRRQLTS
SSSSTCGTGNPIDDCWRCDSSDWSSNRQRLADCSIGFGSGTLGGKNGRIYVVTDSSDNNP
ANPTPGTLRHAVIQEEPLWIVFSSNMFIRLKQELIINSYKTIDGRGAAVHVTGNGCLTIQ
YVQHVIIHNIHIYDCKPSGGAVVAASPTKVGRRGRSDGDGISIFGSQKIWVDHCSLSHCT
DGLIDVVLGSTAITISNNYFTHHDEVMLLGHDDKYVLDTGMQVTIAFNHFGQGLVQRMPR
CRRGYIHVVNNDFTSWKMYAIGGSGNPTINSQGNRYSAPSDPSAKEVTKRVDSTDDGEWA
NWNWRTEGDLMENGAFFVASGEGVSTLYSKASSVEPKAAALVDQLTQNAGVFGGPRDDQG
QSGDSYSGYGGGGAGGTGAIGGTSRGSSSNSDNNFFGMIFGNNAPPRPRLTLLLLSLLMI
CVLSTSTLLLW
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atgcatcctcctcacttctccatctccattctcctgctctgcctcttcttcttcacactt
ctcgaagctactaaaccactaaacctcactctccctcaccaacacccttctcctgactcc
gtcgctctccacgtcacaagtacaatcaatgcatccctctcacggagacaactcacctcc
tcctcctcctccacttgcggcaccggaaacccaatcgacgactgctggcgctgcgactcc
tccgactggtcctccaaccgccaaagactcgccgactgctctatcggcttcggctccggc
accctcggcggcaaaaacggccggatctacgtcgtcacagactcttccgacaacaacccc
gccaacccaactccgggaacactccgtcacgccgtcatccaagaagagcccctctggatc
gtcttctcctccaacatgttcatccgcttaaaacaagaactcatcatcaacagctacaag
accatcgacggccgcggcgccgccgtccacgtcaccggcaacggctgcctaaccatccag
tacgtgcagcacgtcatcatccacaacatccacatctacgactgtaaaccttccggaggc
gccgtcgtcgccgcgtcgcccacgaaagtcgggaggagaggtagatccgacggcgacggg
atctctatcttcggatctcagaagatctgggtcgaccactgctccttgagtcattgcacc
gatgggcttatcgatgtggtgttgggctcgacggcgattacgatatcgaataattacttc
actcatcatgatgaggtgatgctgttgggtcatgatgataagtacgtgctggatacgggg
atgcaggtgacgattgcgtttaatcatttcggacaggggcttgttcagaggatgcccagg
tgtcggagagggtatattcatgtcgtgaataatgattttacttcgtggaagatgtatgct
attggtggtagtggtaatcccactattaacagtcaagggaatcgttactctgctccttct
gatcctagcgccaaagaggtgacgaagcgagtggattcgacagacgatggtgagtgggcg
aattggaactggagaacagaaggagatttgatggagaacggagctttctttgtggcgtct
ggtgaaggagtgagcacactgtactctaaagcttcgagtgttgagcctaaagctgcggct
ctcgtagaccagctcactcaaaacgctggcgttttcggcggtcccagggatgatcaaggt
cagagcggcgattcttattctggttatggaggcggcggcgctggagggacgggcgctata
ggtggtacgtcaagaggaagcagcagcaatagtgacaacaatttcttcgggatgatattc
ggaaacaatgcaccgcctcgaccacgtttaacgttattgttgttgtctttgttaatgatt
tgtgttttgtcgacatcaactctattattgtggtag
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