Brassica rapa (field mustard): 103830166
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Entry
103830166 CDS
T03449
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 1
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103830166
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brp03019
]
103830166
Enzymes [BR:
brp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
103830166
Messenger RNA biogenesis [BR:
brp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
103830166
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
103830166
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
zf-C6H2
IG_AIR9
Motif
Other DBs
NCBI-GeneID:
103830166
NCBI-ProteinID:
XP_009104150
UniProt:
M4CGK9
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All DBs
Position
A07:complement(18673793..18677520)
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AA seq
592 aa
AA seq
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MLSVIRVHLPSEVPIVGCELTPYVLLRRPDKTATTDDVPESAPLEGHFLKYRWYRVQSDK
KVAICSVHPSREATLQCLGCIKTKVPVTKSYHCSTKCFTDAWQHHRVLHERAAAEGNDEE
EELLRLNSSGSVSSILSTVSSLTNGSSSSVYPSAITQKTGAGGETLVEVGRSKTYTPMAD
DVGQVLKFECVVVNAETKQNVGHSCTILTSRVIPAPSPSPRRMIPVSGTVDSNGRPMSMG
SFTVLSYNILADAYASSEIYSYCPTWALSWTYRRQNLLREIVKYHADIVCLQEVQNDHFD
EFFAPELDKHGYQALFKRKTNEVFVGNTNTIDGCATFYRRDRFSHVKKYEVEFNKAAQSL
TEALIPVPQKKIALNRLVKDNVALIVVLEAKFGNQAADIPGKRQLLCVANTHVNISHELK
DVKLWQVHTLLKGLEKIAASADIPMLVCGDFNTVPASAPHSLLAVGKVDPMHPDLMVDPL
GILRPHTKLTHQLPLVSAYSSFARMGGSLTAEQQRRRMDPASNEPLFTNCTRDFIGTLDY
IFYTADTLTVESLLELLDEESLRKDTALPSPEWSSDHIALLAEFRCMPKTRR
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
atgcttagcgttatacgagttcatctaccctcggaggtacctattgttggctgcgaactc
acaccttacgtgcttctccggcggccggataagaccgccaccaccgatgatgttccagag
tcagccccacttgaaggtcacttcttgaagtacagatggtatcgtgtacaaagcgataag
aaagttgctatttgtagtgtgcatccatccagggaggcgacattacagtgtctaggatgc
ataaagacaaaggttcccgtcaccaaaagctaccactgttcaactaaatgcttcacagac
gcgtggcagcatcaccgtgtgttgcacgagcgtgctgccgcggaaggaaacgatgaagaa
gaagagttgctccgtttgaacagttcaggctccgtctctagcatcctcagcaccgttagt
agtttaacaaacggttcatcgtcatcagtttatccctcagccataacccaaaagactggc
gcaggaggggaaacacttgttgaggttggacgctctaagacatacacaccgatggctgac
gatgttgggcaagttttgaagtttgagtgtgtagtggtcaatgcggagacaaaacagaac
gtgggccattcgtgtactatattgacttctcgtgttattccagctccatcaccttctccg
cgtaggatgatccctgttagtggaactgtggattctaatggccgacctatgtctatggga
tcattcactgtgctgtcctataatatattggctgatgcgtatgctagtagcgagatatac
agttactgccccacatgggctctttcgtggacataccgtagacagaatttattacgggag
attgttaagtaccatgcagatatagtttgtctacaggaggtacagaatgaccactttgat
gagtttttcgctcctgagctggataagcatggataccaagctcttttcaaaaggaaaaca
aatgaggtcttcgttggtaatacaaacacaattgatggatgtgctactttctacagaaga
gacaggttttctcatgttaaaaaatatgaggttgagttcaacaaggctgctcaatctttg
actgaggctcttattcctgtgccccagaagaaaattgctttgaatcgattggttaaggac
aatgtagcattaatagttgtcctggaagcaaagttcggtaaccaggctgctgatattcct
gggaagcgccagcttctttgtgtggctaacacacatgtaaacatttctcatgaattgaag
gatgtaaagctctggcaggttcacacattattgaagggactggaaaaaatagctgccagt
gcagatattccaatgcttgtgtgtggtgatttcaatacagtaccagcaagtgctcctcat
tcacttcttgctgtggggaaggttgatccaatgcacccagatttgatggttgaccctctt
ggaattttgcgtcctcacaccaaactaactcatcagctgccattggttagtgcttactcg
tcctttgcaagaatgggaggcagccttactgctgagcagcaaaggagaagaatggatcct
gcctcaaatgaacccttgtttaccaactgtaccagggatttcataggcacacttgattac
atattttacacagcggatacgctaacagtggaatccttattggagctgctggatgaagag
agcttgaggaaggacacggctcttccatctccagaatggtcttctgatcacattgcactt
ttggctgagttccgctgcatgcctaagaccagacgctga
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