Brassica rapa (field mustard): 103830288
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Entry
103830288 CDS
T03449
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 12
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103830288
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brp03019
]
103830288
03036 Chromosome and associated proteins [BR:
brp03036
]
103830288
Enzymes [BR:
brp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103830288
Messenger RNA biogenesis [BR:
brp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
103830288
mRNA degradation factors
5'-3' decay
Decapping complex
103830288
Chromosome and associated proteins [BR:
brp03036
]
Eukaryotic type
Gene silencing
piRNA pathway
103830288
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
Motif
Other DBs
NCBI-GeneID:
103830288
NCBI-ProteinID:
XP_009104295
UniProt:
M4CGV9
LinkDB
All DBs
Position
A07:19192585..19197180
Genome browser
AA seq
477 aa
AA seq
DB search
MNNNRGRYPPGNGTGRGAPPHPDYQSYGQQPQNHQQFQQWSRRAQLPGNANEVQNTTSSQ
PPNDHKFSGSVTLSGGKDWKATLKLPPPDTRYQTADVTATKGNEFEDYFLKRDLLKGIYE
KGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEKIDPNTNVIQAMILVPT
RELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQPVHLLVGTPGRILDLTKKGV
CVLKDCTMLVMDEADKLLSAEFQPSLEELIQFLPENRQFLMFSATFPVTVKAFKDRHLRK
PYVINLMDQLTLMGVTQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKI
TELGYSCFYIHAKMVQDHRNRVFHEFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRT
SESYLHRVGRSGRFGHLGLAVNLVTYEDRFKMYQTEQELGTEIKPIPSQIDQAIYCQ
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgaataacaacagaggaagatatcctccggggaatggaacgggacgtggagctccgccg
catcctgattatcaatcgtacggtcaacaaccgcagaaccaccagcagtttcagcagtgg
tcaagacgcgctcagcttcctggaaacgccaatgaggtccagaacacgacgtcgtctcag
ccgcccaacgatcataaattcagtggctccgttactctcagtggcggcaaagattggaag
gcaacgttgaagctcccacctcctgatactcgttaccagacagcggatgtgacagctaca
aaaggaaatgaattcgaagattactttctgaaaagggatcttttaaagggaatatatgag
aagggttttgagaagccatctcctattcaagaagagagcattcccattgctttgaccggt
agtgatattcttgctagagccaaaaacggcacaggaaagactggtgctttctgcattcct
gttcttgagaaaattgatcctaataccaatgttattcaagccatgattctagttccaacg
cgagagctggctcttcagacttcgcaggtttgcaaggagctttccaaatacttgaacatc
caggttatggtcaccactggcggtaccagtctgagagatgatatcatgcggttacatcaa
cctgttcatctgctcgttggaactcctggaagaatactggatcttactaaaaagggagtg
tgtgttctgaaagactgcacgatgcttgtgatggatgaggccgacaagcttttgtctgca
gagttccaaccttctctagaggaattgatacagtttctgccagagaatcgtcagtttctg
atgttttctgctacatttcctgtcactgtgaaggcttttaaggatcggcatctgcggaaa
ccatacgttatcaatctcatggatcaactcacgctaatgggtgtcacacaatattacgct
tttgttgaagagagacagaaggttcactgcctcaacacacttttctctaagctgcaaata
aaccaatcgataatcttttgcaactctgttaatcgcgtggaactgttggctaagaaaatt
acagagctcggttattcgtgcttctacattcatgcgaagatggttcaagaccataggaac
agagtgttccatgagttccgcaatggtgcttgcagaaatctcgtttgcactgatctgttt
actcgtggaattgacattcaagctgtgaatgtagtgattaactttgattttcctaggaca
tctgagtcgtatctacacagggtgggccgatcaggacggtttggacaccttgggctggct
gtgaatttggttacatacgaggaccgtttcaaaatgtatcagactgagcaagaacttggc
actgaaatcaaaccaattccttctcagattgatcaagccatctactgtcaataa
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