Brassica rapa (field mustard): 103830312
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Entry
103830312 CDS
T03449
Name
(RefSeq) exosome complex component RRP41 homolog isoform X1
KO
K11600
exosome complex component RRP41
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103830312
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brp03019
]
103830312
Messenger RNA biogenesis [BR:
brp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
103830312
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
103830312
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Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
103830312
NCBI-ProteinID:
XP_009104328
UniProt:
A0A397YML3
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Position
A07:complement(19299940..19302607)
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AA seq
240 aa
AA seq
DB search
MEYVNPEGLRLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAVYGPREIQNKSQ
QKNGHALVLCEYSMAHFSTGDRRRQKNDRRSTELSLVIRQTMEACILTELLPHSQIDIFL
QVLQADGGTRSACINAATLALADAGIPMRDLAVSCSAGYLNSTPLLDLNYVEDSAGGADV
TVGILPKLDKVTLLQMDAKLPMETFETVFALASEGCKAIAERVREVLQENTKQLEYRRAA
NT seq
723 nt
NT seq
+upstream
nt +downstream
nt
atggagtacgtaaacccagaaggtctacgattagatggtcgccgattcaatgagatgagg
caaatcgtagctgaggttggagtggtttcaaaggctgatggttctgctgttttcgagatg
ggtaatacaaaagtaattgcagctgtttatggccctagagagattcaaaacaagagccaa
caaaagaatggtcatgcattggtgctttgtgagtatagtatggctcattttagtactggt
gatcgcagaagacagaaaaacgacaggcgatcaacagagctatctcttgtcatccgtcag
acaatggaagcttgcatattaaccgaactcttgcctcactctcagattgacattttcctt
caggttctacaagctgatggaggaacaagatcagcttgtatcaatgctgcgacgttagct
cttgcagacgctggaattccaatgcgtgatctcgctgtttcctgtagtgctggatactta
aacagtactccacttcttgatctcaactatgtggaagatagcgctggaggagctgatgta
accgtcggcattctacctaaactagacaaagtgacactccttcagatggatgcaaagtta
ccgatggaaacatttgaaacggtctttgccttggcttctgaaggttgcaaggcgattgca
gagagagtacgcgaggtacttcaagaaaacaccaaacagctagagtatcgccgagctgca
taa
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