Brassica rapa (field mustard): 103830378
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Entry
103830378 CDS
T03449
Name
(RefSeq) protein TRANSPORT INHIBITOR RESPONSE 1
KO
K14485
transport inhibitor response 1
Organism
brp
Brassica rapa (field mustard)
Pathway
brp04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
103830378
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
brp04121
]
103830378
Ubiquitin system [BR:
brp04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
103830378
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GFIT
Motif
Pfam:
Transp_inhibit
F-box_5
LRR_At5g56370
F-box-like
LRR_4
DUF7885
F-box
LRR_NXF1-5
Motif
Other DBs
NCBI-GeneID:
103830378
NCBI-ProteinID:
XP_009104405
UniProt:
M4CH35
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Position
A07:complement(19555109..19558873)
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AA seq
594 aa
AA seq
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MQKRIGLSFPEEVLEHVFSFIHHDKDRNSVSLVCKSWYEIERWCRRRVFIGNCYAVSPAT
VIRRFPKVRSVELKGKPHFADFNLVPEGWGGYVYPWIEAMSKAYTWLEEIRLKRMVVSDE
CLELIAKSFKNFKVLVLSSCDGFSTDGLAAIASTCRNLKELDLRESDVDDVSGHWLSHFP
DTYTSLVSLNISCLASDVCFSALERLVSRCPNLKSLKLNRAVPLEKLATLLRRAPQLEEL
GTGGYSADVRSDLFSDLYVALSGCKKLKCLSGLWDAAPAYLPAVYSVCGRLTTLNLSYAT
VQSYDLVKLITLCPKLQRLWVLDYIEDTGLEVLASTCKDLRELRVFPSEPFVMEPNVALT
EQGLVSVSAGCPKLESVLYFCRQMTNDALVAIARKRPNMTRFRLCIIEPKAPDHLTLEPL
DVGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGKYAKKMEMLSVAFAGDSDLGMHHVLSGC
DSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDE
RGPPDSRPESCAVERVFIYRTVAGPRFDMPDFVWNMDQQSSMSVSRQIITTNVL
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
atgcagaagagaatcggcctctcgtttcccgaagaagttctggagcacgtgttctccttt
atccaccacgacaaggataggaactccgtttccctcgtctgcaagtcgtggtacgagatc
gagcggtggtgcaggaggagagtcttcatcgggaactgctacgccgtgagccccgcgacg
gtgataaggaggttcccgaaagtgagatccgtggagctgaaagggaaaccgcacttcgct
gacttcaatttggtgccggagggatggggagggtacgtgtatccgtggattgaggcgatg
tcgaaggcgtacacgtggctggaggagattaggctgaagaggatggtggtgagtgatgag
tgcttggagcttatagctaagtcgtttaagaattttaaagttctggtgctttcttcatgc
gatggcttctccaccgatggcctcgctgctatcgcctccacttgcaggaatctgaaagag
cttgatttgcgtgagagtgatgttgacgacgttagcggacactggctaagccatttccct
gatacatacacttccctggtatcactcaacatctcttgcttagcctctgatgtatgtttc
tctgctctggagaggctggtgagtaggtgtcccaatctcaagtctctcaagcttaaccga
gctgttcctcttgaaaaattggctactttgcttcgaagagcgcctcagctggaggaattg
ggcaccggtggctacagtgctgatgtgcgttcagatttgttctctgatttatatgtagcc
ctctctggttgcaagaagttgaagtgcttatctggcctttgggatgctgctcctgcctat
ctcccagctgtttattcggtttgcggtcggcttacaactttgaacctgagttatgcaact
gtccagagctatgatcttgtcaagcttattaccttatgtcctaaactgcaacgcctctgg
gtgctggactacatcgaggatactggtcttgaggtgcttgcttcaacctgcaaggacctt
cgagagctgagagtgtttccgtctgagccttttgtcatggagccaaacgttgcattgacg
gaacaagggcttgtctccgtctccgcgggctgtccaaaactcgagtctgttctctacttt
tgccgccaaatgaccaatgatgcgttggtagcgattgctaggaaacgtcccaacatgact
cgcttccgtttgtgcatcattgagccgaaagcccctgaccatctaacactagagccactg
gatgtgggtttcggagccattgtagagcactgcaaagatctccggcgtctctccctatca
gggctcttgaccgacaaggttttcgaatacattgggaagtatgcaaagaagatggagatg
ctatcggtggcgtttgcaggagacagtgacttagggatgcatcatgttttgtcagggtgc
gatagcctgaggaagctagagataagggactgcccgtttggagacaaggcgttattggca
aatgcttcgaagctggagacaatgcgatctctttggatgtcttcttgttccgtgagtttt
ggagcctgtaagttattaggacagaagatgccaaagctcaatgtggaagtcatcgatgag
cggggtccacctgactcgagaccagagagctgcgctgttgagagagtgtttatataccga
acagtagcgggtcctcggtttgacatgcctgacttcgtctggaacatggaccaacagtca
tcaatgagtgtttccaggcaaatcatcactactaatgtgttatga
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