Brassica rapa (field mustard): 103831011
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Entry
103831011 CDS
T03449
Name
(RefSeq) probable pectate lyase 5
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp00040
Pentose and glucuronate interconversions
brp01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
103831011
Enzymes [BR:
brp01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
103831011
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
103831011
NCBI-ProteinID:
XP_009105097
UniProt:
A0A3P6BQ96
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Position
A07:complement(22699579..22701523)
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AA seq
407 aa
AA seq
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MILLHQLSLSLFSCLFLVLAPTFTASNHVSDPELVVQEVNEKINASRRNLGVLSCGTGNP
IDDCWRCDPKWEKNRQRLADCAIGFGKHAIGGRDGRIYVVTDSSDKDAVNPKPGTLRHAV
IQDEPLWIIFARDMVIKLKEELMMNSFKTIDGRGASVHIAGGACITVQYVTNIIIHGVNI
HDCKKRGNAYVRDSPSHYGWRTASDGDAVSIFGGSHVWVDHCSLSNCDDGLVDAIRGSTA
ITISNNYLTHHNKVMLLGHSDSYTRDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNND
YTHWQMYAIGGSAAPTINSQGNRFLAPNDHVFKEVTKYEDAPQSKWKNWNWRSEGDLFLN
GAFFTPSGGRASSSYAKASSLSARPSSLVASVTGNAGSLSCRKGSRC
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atgatacttcttcaccaattatctctgtccctcttctcatgtctcttccttgttctagct
ccgaccttcactgcctccaaccatgtctccgaccctgaactcgtagttcaagaagtaaac
gagaagataaatgcgtctagaaggaatcttggtgtcctctcgtgtgggaccggaaaccct
atcgacgactgttggagatgcgacccgaaatgggagaagaaccgacaacgattagctgat
tgcgccattggttttggcaaacacgccatcggcggccgtgacggcagaatctacgtggtg
actgactccagcgacaaagacgcggttaaccctaaaccgggaactctaagacacgcagtg
atccaagacgagccgctgtggatcatcttcgcacgtgacatggtcataaagctaaaagaa
gagctgatgatgaactcgttcaagaccatagacggccgtggagcgagcgtgcacatcgcc
ggcggcgcgtgcatcactgttcagtacgtgactaacatcatcatccacggtgtcaacatc
catgactgcaagaagagagggaatgcttacgtcagagactcgccgtcgcattacggttgg
aggacggcgtctgacggagacgccgtctcgatcttcggtgggtcccacgtgtgggtggac
cactgctccttgtctaactgcgatgacggtctggtcgatgcgatccgtggatcgacggcc
attacgatctctaataactacttgacgcaccataacaaagtgatgcttttgggacacagt
gattcgtacacgagagacaagaacatgcaagtcaccattgcctttaatcattttggtgaa
gggcttgttcagagaatgcccagatgtaggcatgggtattttcatgtggtaaataatgat
tatacgcattggcaaatgtacgcaattggtgggagtgcagctccaacgattaacagtcaa
ggcaataggtttcttgctcccaatgaccacgtcttcaaagaggtgactaaatacgaagat
gcaccacaaagcaaatggaagaactggaattggagatcagaaggtgacttgttcctaaat
ggtgcgttttttacgccctctggtggaagagcctcttcaagctatgcaaaagcttcaagt
ctgtcggctagaccgtcctcgttggtggcttctgtgacgggcaatgctggttctctctct
tgtagaaaaggatctcgatgttaa
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