Brassica rapa (field mustard): 103831079
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Entry
103831079 CDS
T03449
Name
(RefSeq) exosome complex component CSL4
KO
K07573
exosome complex component CSL4
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103831079
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brp03019
]
103831079
Messenger RNA biogenesis [BR:
brp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
103831079
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
103831079
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
S1_RRP4
ECR1_N_2
Motif
Other DBs
NCBI-GeneID:
103831079
NCBI-ProteinID:
XP_009105178
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All DBs
Position
A07:23092334..23094323
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AA seq
189 aa
AA seq
DB search
MTEMVTPGDVLGNAAELKPGKGAYVNDNTIYASLTGSRHIVSPLPDSLDQRATVEVTGHK
AHGLIPEPGSLVLARVTKVMARMASVDILCVGSKAVREKFAGVIRQQDVRETEIDKVEIH
QSFRPGDIVRAMVLSLGDSRAYYLSTAKNELGVVSAESAAGETMVPISWTEMQCPLSGQT
EQRKVAKVA
NT seq
570 nt
NT seq
+upstream
nt +downstream
nt
atgacagagatggtaacgcctggagacgtgctcggtaatgcggccgagttaaaacccggc
aaaggagcttacgtcaacgacaataccatctacgcttccctcacaggatctcgccacatt
gtttctcctcttccagattctcttgaccagagagctactgtggaagttacgggtcacaag
gcgcatggacttatccccgagcctggttctcttgtcttagctagggttactaaagttatg
gctcgtatggcttctgttgatatcttgtgtgttggttcaaaggccgttcgtgaaaaattt
gctggcgtaatcaggcaacaagatgttagagaaacagagattgacaaagttgagattcat
cagtctttccgtcctggtgacattgttagagctatggttctgtctcttggtgactcacgg
gcttactatctgtcaactgctaagaatgagcttggtgtggtctctgctgagagtgctgca
ggtgaaacaatggttccgattagttggactgagatgcaatgtcctttgtctggtcaaacc
gagcagaggaaagttgccaaggtggcctaa
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