Brassica rapa (field mustard): 103831110
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Entry
103831110 CDS
T03449
Name
(RefSeq) polyadenylation and cleavage factor homolog 1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
103831110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
brp03021
]
103831110
03019 Messenger RNA biogenesis [BR:
brp03019
]
103831110
Transcription machinery [BR:
brp03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
103831110
Messenger RNA biogenesis [BR:
brp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
103831110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
103831110
NCBI-ProteinID:
XP_009105211
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All DBs
Position
A07:complement(23256023..23257493)
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AA seq
416 aa
AA seq
DB search
MSSSNGVFVHQRNAHRNGGRTMWKRPIDNRGCRIGGFQEEEEERSRYAQPQKRPRYHQAQ
TQFQSAKPAGGGTPPMYRHHHHHDSNLSRVSNYGDVINSNSSNVFPFALRNNESNADYQR
PYGYRNPNPQSVPLPLPYRKLDGFDSLPEWVPNFVPNTNREITGVRFNANQLSQAPPVFT
NLPNSMPLNHSNMVSVVSQSLPQQPVVSKELADLLSVLNNNEKEKECDLGLDFDKINLNV
RHESVVKSLYSDMPRQCSSCGVRFKCQEEHSKHMDWHVRKNRMAKDATKAATTTRASQKP
KKSRDWFASLSLWLSAATGAAIEGAKPLFGETQKTKEEEKQQQRYVPADENQKMCALCLE
SLEEFFSHEEDDWMYRDAAYLNMNGSGPIVHVNCMPEPRKGPAKGLTKPVASAVAC
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcatccaacggagtcttcgttcatcagagaaacgcgcatcgtaacggtggaaga
accatgtggaagagaccaatcgacaaccgcggatgcagaatcggaggtttccaggaggag
gaggaggagcgaagccgttacgcccagcctcagaaacgccccagatatcatcaggcgcaa
actcaattccaatcggctaaacctgccggcggcgggactcctcctatgtatcgtcatcat
catcatcatgatagtaacttgtctagggtttctaattacggtgatgtgatcaattctaat
tcaagtaatgtctttccttttgctcttcgtaacaatgaatctaacgccgattatcagaga
ccttacggttatagaaacccaaatccccaatcggttccgcttcctttaccgtatcgtaaa
ctagatggtttcgattcgttaccggaatgggttcctaatttcgtacctaacacaaaccgt
gagataaccggagtccggtttaacgctaaccaactttctcaagcaccgcctgtgtttacg
aatttgcctaattcaatgcctttgaatcattcaaacatggtttcagttgtgtcgcaatca
ttaccccaacaacctgtcgtgagcaaagaattggctgatttacttagcgttcttaacaac
aatgagaaagaaaaagaatgtgatctcgggcttgattttgataaaattaatcttaacgtc
cgacatgaatctgttgttaagtctctttattccgacatgccgaggcaatgttcttcgtgt
ggagttagattcaagtgtcaagaagagcatagcaagcacatggactggcatgtgaggaag
aatagaatggctaaagacgcgaccaaagccgccacaaccacgagggcaagccagaaaccg
aagaagtcgcgtgattggtttgctagcttgtctctatggctcagtgcggcaacaggagct
gccattgaaggggctaaacctctttttggagaaacacagaagacgaaagaagaggagaaa
caacagcaacgctatgtccctgctgatgagaaccagaagatgtgtgcgttatgtttggag
tcgttggaagagtttttcagccatgaagaggatgattggatgtacagagatgctgcctac
ttgaacatgaacgggtctggtcctatagtgcatgttaactgtatgccggaaccacgaaaa
gggcctgcaaagggattgacaaagcctgttgcgagtgcagtggcctgctga
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