Brassica rapa (field mustard): 103831437
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Entry
103831437 CDS
T03449
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH3
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103831437
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
brp03041
]
103831437
03009 Ribosome biogenesis [BR:
brp03009
]
103831437
Enzymes [BR:
brp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103831437
Spliceosome [BR:
brp03041
]
Complex A
U2 snRNP components
U2 related factors
103831437
Complex B
103831437
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
103831437
Ribosome biogenesis [BR:
brp03009
]
Eukaryotic type
90S particles
Helicases
103831437
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
AAA_22
WHD_HA2
AAA_19
nSTAND3
ResIII
SRP54
Cas3-like_C_2
ABC_tran
AAA_30
T2SSE
FtsK_SpoIIIE
AAA_7
Flavi_DEAD
UvrD-helicase
nSTAND_NTPase5
SLFN-g3_helicase
NACHT
ATPase
PhoH
Motif
Other DBs
NCBI-GeneID:
103831437
NCBI-ProteinID:
XP_033131314
LinkDB
All DBs
Position
A7
Genome browser
AA seq
670 aa
AA seq
DB search
MEKNKWSGKAYSQRYYEILEKRKSLPVYAQKQEFLQCLMSNQTLILVGETGSGKTTQIPQ
FVLEAVNEKNPSKWLVGCTQPRRVAAMSVASRVAEEMDVAIGEEVGYSVRFEDCTSSKTV
LKYLTDGMLMREAMTDPLLQRYKVIVLDEAHERTLATDLLFGVLKRVLSNRPDLKLVVMS
ATLEAEKCLEYFSGAPLMKVPGRLHPVEILYTQEPERDYLDAAIRTVVQIHMSEPPGDVL
VFLTGEEEIEDACRKIVCELGDQVNVVPLYSSLPPAMQQKIFDPPTENVRKIVVSTNIAE
TSLTIDGVVYVVDPGFAKQKLYNPETRVESLLVSAISQASANQRAGRAGRTRPGKCFRLY
TEKSFNHDLIEQTYPEILRSNLANTVLTLKKLGIDNLVCFDYMDPPAPVTMGRALNDLLD
LGALDEELNLTRTGEMMSEFPLDPQMAKMLIVSPKFNCSNEILSISAMLSVPNCFVRPRG
EAQKAADEARARFGHTDGDHLTLLNVYHDYKQNNGDPNWCYQNFINHRAMKSADNVREQL
VRIMSRFNLKTCSSDFTSRDYYINIRKALLAGYFMQVAHLDRTGHYLTAKDGQMVHLHPS
CCLDHKPEWVVYNEYVLTSRNFIRTVTYIRGEWLVDVAPDYYHLSNFPNCEAKRVLQKLS
KKRDRAGNPK
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atggagaagaataaatggagtggaaaagcttatagtcagaggtattacgagattcttgag
aaacggaagagcctacctgtgtatgcgcagaaacaagagtttctacaatgcttgatgagc
aaccagacgttgatacttgtcggtgaaaccggtagtggtaagactacgcagatcccacag
tttgttttggaagccgtgaacgaaaaaaaccctagcaagtggctggtcgggtgcacacag
cctcgtagagtcgcagccatgtccgtggcaagtcgtgttgctgaagagatggatgtagct
atcggtgaagaagtcggttactccgttcgctttgaggattgcactagctccaaaacagtg
cttaagtacttgaccgatggtatgcttatgagagaagcaatgaccgatccgcttctacag
agatataaagtgatagtcctcgatgaagcccatgaaagaactttagccacggatttacta
tttggtgttctgaaacgagtcttgagcaacagaccggaccttaagctagttgtgatgagt
gcaactttggaagctgaaaaatgtcttgagtattttagcggtgcacctcttatgaaagtt
ccgggaaggctccatcccgtagagatcttgtacacgcaagaacctgagagagactatctt
gacgctgctattcggacagttgttcagattcacatgtctgagccgcccggtgatgttctt
gttttcttaaccggcgaggaggagattgaagatgcatgcagaaaaatcgtctgtgaactt
ggggatcaagtaaacgttgtgcctttgtattcttctcttccaccagccatgcagcagaag
atatttgatcctcctacggagaatgtgaggaagattgttgtatccaccaacatagcagag
acttctttaaccatcgatggagttgtttacgtggttgatcctggcttcgctaagcagaaa
ctatacaaccctgaaactcgtgttgagtcgttgttggtgtctgcaatatcacaagcaagt
gctaaccagagagctggtcgtgcaggtagaacacggcctgggaaatgtttcaggctttac
acagagaagagtttcaaccatgatttgattgagcagacgtatcctgagatactgagatca
aaccttgcaaacactgttctgactttgaaaaaacttggtatagataacttggtttgcttc
gactatatggaccctcctgctcctgtgacgatggggcgggccttgaacgatttgcttgat
ctgggagcattagatgaagaacttaacttgacaaggacgggtgagatgatgagtgagttt
cctttggatccgcagatggcaaagatgcttatagtcagtcctaaattcaactgctccaac
gagattctctcaatttcagctatgttatcagtaccaaactgctttgtaaggccaagagga
gaggcgcaaaaagcagcagatgaagctagagctaggtttggtcacactgatggagatcac
ctaacgttgctgaatgtgtaccatgattataaacaaaacaacggagacccgaattggtgc
taccagaacttcatcaaccatagagcaatgaagtctgctgacaatgttagagagcagttg
gtgaggataatgtccaggtttaatctcaagacgtgtagctctgattttaccagccgtgac
tactatattaacataagaaaggcattgcttgctggctatttcatgcaagtggctcattta
gaccgcacgggccactacttgaccgccaaagatggacaaatggttcacctgcatccatcg
tgttgcttggatcacaaaccggagtgggtagtctacaatgaatatgttctgactagtcgt
aatttcataaggactgtcacgtatattcgaggtgaatggctagtggatgttgcaccagat
tactatcatctttccaacttcccaaactgtgaagccaaacgagtcctccagaagctttct
aagaagagagacagagcggggaacccaaagtga
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