Brassica rapa (field mustard): 103831552
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Entry
103831552 CDS
T03449
Name
(RefSeq) paired amphipathic helix protein Sin3-like 4
KO
K11644
paired amphipathic helix protein Sin3a
Organism
brp
Brassica rapa (field mustard)
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
brp03036
]
103831552
Chromosome and associated proteins [BR:
brp03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
Sin3A-HDAC complex
103831552
REST complex
103831552
Heterochromatin formation proteins
Other heterochromatin formation proteins
103831552
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAH
Sin3a_C
Sin3_corepress
NS1_C
Atrophin-1
Motif
Other DBs
NCBI-GeneID:
103831552
NCBI-ProteinID:
XP_033130289
LinkDB
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Position
A07:24741540..24747775
Genome browser
AA seq
1290 aa
AA seq
DB search
MMVGGGGSAQKLTTNDALAYLKAVKDKFQDKREKYDEFLEVMKDFKAQRVDTSGVILRVK
ELFKGNRELILGFNTFLPKGFEITLLPEEDDQPPPKKPVEFEEAISFVNKIKTRFQGDDR
VYKSFLDILNMYRKENKSITEVYQEVAILFRDHHDLLVEFTHFLPDTSGTASTTNDPAKM
SIRDRGGIKSLPTMRDSDKKDRINDLKTEHMDLDHERSLLKESKEDVRRIDKKNDYMDGR
DRKGDGIDSQKEQFLLGKKKLTLRDNDSPGISNQAREGGDKFRGDIATSSTYDDKGHVQE
LAFVDRVKAKLKTSEYQEFLRCLNLFSKEIISQPELQSLVGDLIGVYPDLIEAFRVFLVQ
CEKNDGLLSGIVTKKSLWSDGKVPQPTKSQDKDTEREREKAERFRERDREKERLEKAAAS
QKWAKPINELDLLNCEQCTPSYRLLPKNYPIPIASQKMEIGSQVLNDHWVSVTSGSEDYS
FKHMRKNQYEESLFRCEDDRFELDMLLESVNSATNRVEELLAKLNSNELKTDTPICIEDH
LTALNIRCIERLYGDHGLDVLDLLKKNAYLALPVILTRLKQKQEEWIRCRSDFNKVWADI
YTKNYHRSLDHRSFYFKQQDSKNLSTKALLAEIKEIAEKKRAEDDALLALAAGNRRTVCS
NMSFDYPDPDLHEDLYQLIKYSCGEMCSTEQLDKVMKVWTEFLEPMFGVPSRPQGAEDRE
DAVKSTTNLSECSPQNVVTVANNGTRKASDLDRDVTAGKTADALLRDNTKKDKMPKNLTT
PDERPETKQAVSIERVHSSTTPLVDGLLSQRNGVSNSNPKSTALASGVEIEMKHNHVNGP
RVEVFPNGTVAETSTNQRPNEASAKVEREEGELSPTGEFEEDNFAENDLEPLSNGKDGGG
GENDGNAVDEGDESAPRSSDVSGNTSQNGDVSGTESGDGEGCYPEDDNKVESEGEAEEEE
EEGMSDAHDVAEGDNRPVLPISVRNLLHVKPLAKYVPPALCDKYKDVTNSRVFYGNDSYY
VLFRLHQILYDRILSAKINSSCPERMWKTSNSANPADSYSRFMNALYNLLDGTSDNPKFE
DDCRAIIGTQSYVLFTLDKLIYKLIKHLQAVAADEMDNKLHQLYLYEKSRKPEKYLDAVY
YDNARVLLPDEDIYRIECELSTPTKLSMMLLNNGHDKPDVTSISMDQTFASYLHNKFLSS
QPNVKENPRIYLNRNKRKNGEDQVKISNGLECKITCSSSKVSYVFDTEDVLHRLKRKKVS
NQSRQDPVVASGSSIRQRRIQSYQKLLTGQ
NT seq
3873 nt
NT seq
+upstream
nt +downstream
nt
atgatggttggaggaggaggaagtgcgcagaagctaactactaatgatgcacttgcttac
ctcaaagctgtcaaggataagtttcaagacaaacgcgaaaagtacgatgagtttcttgag
gtcatgaaagattttaaagctcagagagttgatacaagtggtgttatcttgagggtgaaa
gaactattcaaagggaaccgagagctgatcttgggtttcaacactttcttaccaaagggt
tttgagatcacactcttacccgaagaagatgaccaacctccccctaagaaacctgttgag
tttgaggaagctattagttttgtcaacaagattaagacaaggtttcaaggtgatgatcgt
gtatacaaatcgtttctagacatattgaacatgtatcgaaaggaaaacaagtccattacc
gaggtctatcaggaggtggcaatccttttccgggaccatcacgatttgcttgtggagttc
actcactttctccctgatacttcaggaaccgcatccactactaatgatcctgctaaaatg
tcaatacgtgaccgaggaggcattaaatctcttcccaccatgcgtgactctgataagaag
gaccggatcaatgacctcaaaacagagcatatggacctagaccatgagagatctctgttg
aaagaaagcaaagaagacgtcagacgcattgacaaaaagaacgattacatggatggtaga
gacaggaaaggcgatggaatagatagccagaaagagcagttcctcctcggtaaaaagaag
ctgacactaagagataatgactctcctggaatctcgaatcaggctagagaaggaggagac
aagtttcgtggagacattgccacttcttctacttatgatgataaaggccatgtccaagaa
cttgcttttgttgatcgagtgaaggcaaaactcaaaacctccgagtaccaagagttcttg
agatgtcttaatctgttttcaaaggaaattatcagccaaccagagttgcagtctttggtg
ggagatttgattggagtgtatccagaccttattgaggccttcagagtctttttggttcag
tgtgaaaagaatgatggattactctctggtatcgtcactaagaagtccttgtggagtgat
ggcaaagttcctcagcctactaagtcacaggacaaggatacagagcgagaacgtgaaaag
gctgaaaggtttagagaaagagaccgtgagaaggagaggctcgagaaggctgcagcgagc
cagaaatgggcaaagcctatcaatgagctcgatctcttgaactgtgaacagtgcactcct
agctatcggttgcttccaaagaactatccaatccccattgcaagccagaaaatggagatt
ggtagccaggtgcttaatgatcattgggtgtctgtcacttcaggaagtgaagactattca
tttaagcacatgcgcaagaaccagtacgaagagagcctcttcagatgtgaagatgacagg
tttgagctagacatgctgttagagtctgtgaactcagctaccaatcgtgtggaagagtta
ttggcaaagcttaacagcaatgaactgaaaacagacactcccatctgtattgaggatcac
ctcacagctttaaacataaggtgcatagagcgtttatacggtgaccatgggctggacgtg
ttggatctgttaaagaagaatgcttatcttgctttacctgtaatactgacccgtttgaaa
cagaagcaagaagagtggataaggtgtcgttctgattttaacaaagtgtgggctgacata
tacaccaagaactaccacagatcacttgatcatcgcagtttctatttcaaacaacaagac
tcaaagaatctgagcacaaaagcgttgctggcagagatcaaagagatcgctgaaaagaag
cgagcagaagacgatgcactccttgctcttgcggctggaaacagacgaactgtttgctcc
aacatgagttttgattatccagatcctgatcttcacgaggatctgtaccagctgatcaag
tattcatgtggagaaatgtgttcaacggaacagctagataaggtcatgaaggtgtggaca
gagtttctggaaccaatgtttggtgttccttctcgccctcaaggtgctgaagaccgagaa
gatgccgtcaagtctactacgaacctgagcgagtgcagtcctcaaaatgtagttactgtg
gccaataatggcactcgaaaagctagtgatttggatagagatgtcactgctggtaaaact
gcagatgccttattacgtgacaacactaagaaagataaaatgccgaagaatctaaccaca
cctgacgaaagacctgaaaccaaacaagctgtttctattgaacgtgtgcatagctcaact
acaccgcttgtagatggattgctatctcaaaggaatggggttagcaatagtaatccaaaa
tctactgcgttagccagtggagtggagattgagatgaagcataatcatgtaaacgggcca
cgcgtggaggtgtttccaaatgggacagtggcggagacatcgactaatcaaagacctaac
gaagcctctgccaaagtggaaagagaggagggtgaactttcccccacaggagagtttgag
gaagataactttgcagagaatgacttggagcctctcagcaatggtaaagatggtggtgga
ggagagaatgatggtaatgcggttgatgaaggtgatgaaagtgcaccaagatcatcagac
gtcagcggaaacacatctcagaatggtgatgtttccggaaccgagtctggtgatggtgaa
ggttgttaccccgaagatgataacaaggtagaaagtgaaggtgaggctgaagaagaagaa
gaagaaggtatgtctgatgcacatgatgttgcagaaggtgataataggcctgtgttgccc
atatctgtgcgtaacctgctacatgtgaagcctctggcaaagtatgtccctccagcgtta
tgcgataaatacaaagatgttactaactccagagtcttctatgggaatgactcatattac
gttcttttcaggcttcatcagattctgtatgacagaatattatcagcaaagatcaattcg
tcttgtccagaaagaatgtggaagacctcaaactcagcaaaccctgcagattcctactcc
agattcatgaatgctctctacaacttgcttgatggcacctctgataatccaaagtttgaa
gatgactgccgagctatcattgggacacagtcatatgttctcttcacactggacaaactg
atctataagctcatcaagcatctccaagcagtagcagctgatgagatggacaacaagcta
caccagctatacttatatgagaaatcaagaaagcctgaaaaatatcttgatgctgtttat
tatgacaatgctcgtgttctccttcctgatgaagatatataccgcattgaatgtgaactg
tcgacaccgacaaaattatctatgatgcttctgaacaacggacatgataagcctgatgtg
acatccatatccatggatcaaacttttgcatcttacctccacaataaattcctttccagt
caacctaatgtgaaggagaatcctcgaatctatctaaacaggaataagcgtaaaaatggt
gaggatcaagttaagattagtaacggtttggagtgtaagataacctgcagttcttcaaag
gtctcctatgtattcgacacagaggatgttttgcatcgtcttaagaggaagaaggtttca
aaccaaagcagacaagaccctgttgttgccagtggctcttcaatcaggcaaaggaggata
caaagttaccaaaaacttctcaccggccaatga
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