Brassica rapa (field mustard): 103831686
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Entry
103831686 CDS
T03449
Name
(RefSeq) polyadenylate-binding protein 5
KO
K13126
polyadenylate-binding protein
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03015
mRNA surveillance pathway
brp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
103831686
09123 Folding, sorting and degradation
03018 RNA degradation
103831686
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brp03019
]
103831686
03041 Spliceosome [BR:
brp03041
]
103831686
Messenger RNA biogenesis [BR:
brp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
103831686
mRNA cycle factors
Stress granule specific factors
103831686
Spliceosome [BR:
brp03041
]
Complex C
Other components
Complex C specific factors
103831686
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_10
RRM_occluded
RRM_7
RBD_DEAH11
Motif
Other DBs
NCBI-GeneID:
103831686
NCBI-ProteinID:
XP_009105835
UniProt:
M4DHZ1
LinkDB
All DBs
Position
A07:complement(25402214..25406379)
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AA seq
684 aa
AA seq
DB search
MAAAVASGIAPTTAMVDQVPNQPSVTVASPQSTTPFTQVAAVAAAAAAAEALQAHPNSSL
YVGDLDQSVNEAHLLDLFNQVAPVQTVRVCRDLTRRSLGYAYVNFANPDDAMRAMDSLNY
TPIKDRPIRIMRSNRDPSTRLSGKGNVFIKNLDVSIDNKALYDTFSIFGTILSCKVAMDV
TGRSKGYGFVQFEKEETAEAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGTVPRFTNV
YVKNLPKEIGDDELKKTFGKYGDISSAVVMKDQSGSSRCFGFVNFESPEAAAVAVEKMNG
ISLGEDVLYVGRAQKKSEREEELRRKFELERISRFEKLQGSNLYLKNLDDSVNDEKLKEM
FSEYGNVTSCKVMMNSEGVSRGFGFVAYSCPEEALRAMNEMNGKMIGRKPLYIALAQRKE
ERRSHLQTLFSHMRPNGTMSPMASPMPGFHHHPPGGAMAGPHHPMYVGQNGQGLVPSQPM
GYGYQLQFMPGVRPGSGPSNFMMPYPLQRQNQPGPRVGFRRGATNMQQHFQQQQMMQQNA
SPGMRYMGGPGNRRNGMEGTAPQGIIPLPLDASAISHNASQNPQKPPLLPISKLMSALAL
ANPASHPQMLGEQLYPLVEKQEPVHTAKVTGMLLEMDQAEILHLLESPEALKAKVSEALD
VLRLSANPPAVSSVDDQFAPSATE
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggctgttgcatcaggaattgccccgacgacggctatggttgatcaagtccct
aaccaaccatcggtcacggttgcgtctcctcaatccacaactccattcactcaggtagcc
gctgtggctgcagcggctgcagccgccgaggcgttacaagcgcaccctaactcgtcgctc
tacgtgggagatttagaccaaagtgtcaatgaggcacatctgttggatctgttcaaccaa
gttgctcctgttcagacagttagggtttgtcgtgatctcactcgccgttctcttggttac
gcttacgtcaacttcgctaatcccgatgatgcgatgcgagcgatggatagtctgaactac
actcccatcaaagacaggcccataaggatcatgcgttcgaaccgtgacccgagcacgaga
cttagcggtaaaggcaatgttttcatcaagaacctcgacgtatcgattgataacaaagct
ttgtacgatacgttctccatcttcgggactatactctcttgcaaggtggcaatggatgtt
acgggaaggtccaaaggttacggctttgttcagtttgagaaggaggagaccgctgaggct
gctatcgacaagcttaacggaatgctgcttaatgacaagcaagtgttcgtgggacacttt
gttaggcgtcaggacagggctcggtccgagagcgggacggtccctaggtttactaacgtg
tatgtgaagaatcttcctaaggagattggtgatgatgagctgaagaagacgtttgggaag
tacggtgacatttcgagcgcggttgtgatgaaggatcagagtgggagctcgaggtgtttt
gggtttgtgaacttcgagagccccgaggcggctgcggtggcggttgagaagatgaatggg
attagtcttggggaggatgtgctgtacgttgggagggcgcagaagaagtctgagagggag
gaggagctgaggaggaagtttgagcttgagaggatcagtaggtttgagaagttgcaaggt
tcgaatttgtatttgaagaatcttgatgatagtgtgaatgatgagaagctcaaggagatg
ttttctgagtatgggaatgtgacctcatgcaaggttatgatgaactcagaaggtgtgagc
agagggtttggtttcgttgcttattcatgtcctgaagaagctttaagagctatgaatgaa
atgaatgggaagatgataggaaggaaacctctttacattgctttggctcaacgcaaggaa
gagaggaggagccacctccagactttattttcccatatgaggccaaatgggacaatgtcg
ccaatggcatcaccaatgcctggtttccatcaccacccaccaggtggtgcaatggcagga
ccacaccatcccatgtacgtgggccagaacggtcaaggtctggtgccatcgcagcctatg
gggtatggttaccagcttcagttcatgcctggggtacgtccaggttctggtccatctaac
ttcatgatgccttaccctcttcaaaggcaaaaccagcctggtccccgtgttgggttcagg
cgtggtgctactaacatgcagcagcacttccagcagcaacagatgatgcagcaaaatgca
agtccgggtatgagatacatgggaggcccaggcaacaggaggaatggaatggaaggaact
gctccacaaggcatcatccctttgccgttggatgcatctgcaatctctcacaatgcttct
caaaacccacagaagccaccactcctccccatttctaagctcatgtctgccttggctctg
gctaaccctgctagtcacccacagatgcttggggagcagctttaccctctggtggagaag
caggagccagtccacacggccaaagttacagggatgttgctggagatggaccaggccgag
atcctgcaccttctcgagtctcctgaagcacttaaggccaaagtctctgaagctctggat
gtgctcaggctctctgctaatccgccagctgtgtcctccgttgatgaccagttcgcaccc
tcggcaaccgagtga
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