Brassica rapa (field mustard): 103832403
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Entry
103832403 CDS
T03449
Name
(RefSeq) nuclear-pore anchor
KO
K09291
nucleoprotein TPR
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
103832403
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brp03019
]
103832403
Messenger RNA biogenesis [BR:
brp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
103832403
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_MLP1_2
XLF_CC
Motif
Other DBs
NCBI-GeneID:
103832403
NCBI-ProteinID:
XP_009106649
LinkDB
All DBs
Position
A07:complement(28324609..28337637)
Genome browser
AA seq
2091 aa
AA seq
DB search
MPLFMPDDELARLSSDAASVVAERADEYIRKLYAELDSVRAKADAASITAEQTCSLLEQK
YLSLSRDFASLESQNAQLQSDLDGRLAELAQSQAEKHQLHLQSIEKDGELERMTTEMSEL
HKSKRQLMELLEQKDAEISEKNSNIKSYLDKIVKLTDANSEKESRYAEAGAELARSQAMC
SRLSQEKELMERHTKWLDEELTAKVDSYAELRRRHSDLEAEMSAKLVDVEKNYNECSSSL
NWHKERLRELEAKITSLQEELSSCKVAAATMEEQYNAELSTANKLVELYKESSEEWSRKA
GELEGVVKALEARLIQVESGYKDSLEKEMSTNQQLEKENEDLKQKLEKLEAEIEKTRKTN
ELTLLPFSSFTRGADDSGTSNMIEESHAIISKVPAGVSGTALAASLLRDGWSLAKIYEKY
QEAVDAMRHEQLGRKEAELILQRVLSELEEKAEFIQEERGEHERLVEAYSLVNQKLQDSV
SEQSNMEKYIMELKADLRRRERENILSQKDISDLQKQVTILLKECRDVQLRCGAARDDEE
DDAQLSDVEMEMESEADKIISEHLLKFKDINGLVEQNVKLRNLVRSLSEQIESREMELKE
MFETELKKKTDEASSKVAIVLKRAEEQGQMIESLHTSVAMYKRLYEEEQKRYSSNSRSSD
LPPVPGRNNFLHLLEDSQEATKRAQEKTVERIRSLEDDLAKARSEIIAIRSERDKLAMEA
NFVREKLEGIMKESERKREEMNGVLARNIEFSQLIIDHQRKLRESSESLHAAEDISRKLS
MEVSVLKQEKEVLSNAEKRASDEVSTLSQRVYRLQATLDTIQSTEEVREEARAAERRKQE
EHIKQLEKEWAEAKKELQEERSNSRNSTSDRNQTLNNAVMQVEEMGKELANALKAVSAAE
SRASVAEARLSDLEKKIRSSDPKGLDMDSGGVVSLSDNEMSVELRTAKEEMEKLRGDVES
SKSHMLQYKSIAQVNEIALKQMESAHENFRLEAEKRQESLEAELVSLRERVSELENDCLQ
KSEQITNAAAGKEDALVSASAEIASLREESLVKSSQIEAMNIQMSTMKDDLGKEHEKWCV
AQRNYERQVILQSETIQELTKTSQALASLQEEASELRKLADSRGTEISELNSKWSEEKCM
LEQQKNQAEKMYHELNEQNKLLHSRLEAMHLRSAEKDSRSGNLSSGSIDSDQLGDSGLQS
VVNYLRRTKEIAETEISLMRQEKLRLQSQLESALKMAESARGSLNAERASTRASLLTEDE
IKSLQLQVSEVNLLRESNMQLREENKHNFEECQRLREVAQKAKTDSENLENLLKQKQTEL
DLCISEMERLRKESDLEKKRVDELRETYKNIDVADYNRLKVEVRQLEEKLKAKDNHIEGF
KKLLLEKQNKISQLEKDLTNCKNDLSEREKDLTRCKAELSEKEKTLDSSQQAQATMESDS
EKLKAEITRVKRSYTFMKKKLEKERDDLNSDNQSLSKQLEEAKEAGKRTTTDATVEQAVK
ERDEKEQKIQILDKYLHSLKDDLKKKDDELTKEKTERKSVEKVLEDSLANIKKEKTKVDE
ELVKLERYQTALANLSEELDKLKQADGNLPEGTSAVQVLSGSVLNDQAAAYVSAVDSFER
VARTFVLNSQGSTKSTDMVTEASPATVEPSATARASSSKAPVATTQQQLKVKRLTLQKPN
AELRRGRIIRPQLGKPEEPPQVDTEMPEAEGAGGEGKQPSSNVTESQGTTVVPPVQTHVR
KRQADSLASEPPQATQGEASTEIVPPAFKKAKGSETEPDTAEGENLSKEPDMDETMDATN
AAEDDNEETEAETADEETMEAQQETEAEEGQDKTDEPVEENPTKTETIPTEEEFKDQTEQ
ENQDLADAEFDKEEGELDLDTLEDLEEPTDVATTPMQSPIRMETTMEEAETTIEPPLEDV
KNDEGGDVAVEEASDKPNNGNNQQVAETDLKPETTSASATPPTSSTPETEETKRNRSQVA
ETTVATTVSASTTPASAGASETPETSEETKRAASPSRTINIADKAKEKAAIRQAGVAALG
GTRTPSPANRAPSPPAPRGRGRIVNTRGGGRVNSRGGRTTRGGRGPPPSQP
NT seq
6276 nt
NT seq
+upstream
nt +downstream
nt
atgcccttgtttatgcccgacgacgagctcgcgcggctctccagcgacgccgcgtcggtg
gtcgccgagcgagccgacgagtacatccgcaagctctacgccgagctggacagtgtccgc
gccaaggccgacgccgcttccatcacggcggagcagacgtgctcgcttctcgagcagaag
tacctctcgctctctcgcgatttcgcgtcgcttgaatctcagaacgcgcagcttcagtcc
gatctcgacggtagattggctgagctcgcgcagtctcaggcggagaagcaccagcttcat
ttgcaatcgattgagaaggatggagagttagagaggatgacgacggagatgtctgagctt
cacaagtccaagaggcaactcatggagttactggagcagaaagatgctgagattagcgag
aagaattcgaatatcaagagctatctggataaaatcgttaagctgactgacgccaattcg
gagaaggagtctagatatgctgaagcaggagcagagttggcgcgttcgcaagctatgtgc
agtcgtttatctcaggagaaagagctcatggagaggcatacgaaatggcttgatgaggag
ttaacagccaaagttgatagttatgctgaactccgtaggaggcattctgatcttgaggct
gaaatgtctgcgaagcttgtcgatgttgagaaaaattacaatgagtgctctagttcgttg
aattggcataaggaaagactgagagagctggaagctaagattacttcactacaagaggag
ctcagctcgtgcaaagttgcagcagcgaccatggaagagcaatacaatgctgaactttct
actgcgaacaagcttgttgagctgtacaaggaaagttcggaggagtggtccagaaaggcg
ggtgaacttgagggtgtcgttaaggccttagaggcacgcttgatccaagtcgagagtggg
tacaaagatagtcttgagaaagaaatgtctacaaaccagcagctagagaaggagaacgaa
gaccttaaacaaaaacttgagaagcttgaagcagaaattgagaaaactaggaaaacaaat
gagctaacgcttttacctttcagcagtttcacaagaggggcagacgattcagggaccagc
aacatgatagaggaaagccatgcaataatttctaaggttcctgctggtgtgtcaggaacg
gcgctggcagcttcactcttacgtgatgggtggagtttggccaaaatttatgaaaagtat
caagaggctgttgatgcaatgagacatgagcaattaggtcgaaaggaagctgagttgata
ctacaacgggttttatcggaattagaagagaaagctgagtttatccaagaggaaagaggt
gagcatgagcgtttggttgaagcttattcactagtcaatcaaaaacttcaggattctgta
tctgaacaatcaaatatggagaagtacatcatggagctaaaggctgacttgaggagacgg
gaacgtgaaaatattctatctcagaaagatatatccgacttacagaagcaggtaacgata
ctactgaaggagtgccgtgatgtccaactccgctgtggagctgccagggatgatgaagaa
gatgatgctcagctttctgatgttgagatggaaatggaatctgaagctgataaaattatt
tcagagcatcttttgaagtttaaagatataaatggactagttgagcagaatgttaagctc
cgaaaccttgttcgtagtctctcagagcagattgaaagtagggaaatggagctgaaggaa
atgtttgagacagagctgaagaaaaagactgatgaagcttcttcgaaagtagccatcgtg
ctcaaaagagctgaagagcagggtcaaatgattgaatcacttcacacatctgttgcaatg
tataaacgactatatgaagaggaacagaaacgttattcatctaattctcgttcatcagat
ttgcctccagtgccaggaaggaataactttttacatctgcttgaagattcacaggaagct
acgaaaagagcccaagaaaaaactgtcgaacgcatccgaagtctggaagacgatttagcg
aaggctaggagtgagataatagcgataaggtctgaacgggataagttggccatggaggca
aattttgttagggaaaaactagaaggcatcatgaaagaatctgaacgcaagagagaagaa
atgaacggtgttttggcaagaaacatagagttctcgcagctgatcatcgatcaccaaagg
aagttacgtgagagttctgagtctctgcatgcagcggaagatatttctagaaaattatca
atggaggtttcggttctaaaacaagaaaaagaagtgttatccaatgctgaaaaacgagct
tctgatgaagtttctactctatctcagagagtttatcgtcttcaggctaccttggatact
atacagagtacagaggaagttcgtgaggaagcaagagctgctgagagaaggaaacaagag
gagcatatcaagcaacttgagaaagaatgggctgaagctaaaaaagaattgcaagaagaa
aggagcaattcgcgaaatagcacttcggaccgcaatcaaactttgaacaatgctgttatg
caggtcgaagaaatgggaaaagaattggctaatgccttgaaggctgtctcggcagcagaa
tcaagggcttctgtggctgaggctagactttctgatttggagaagaagataaggtcttca
gatcctaagggccttgatatggacagtggtggagtcgtctctctttctgataatgagatg
tccgtagaactgcgtactgcaaaggaagaaatggaaaagttgaggggagatgtagaatct
agcaaaagccacatgcttcagtacaagagtatagcccaggtgaacgaaattgctttaaag
caaatggaatcagcccatgagaacttcagacttgaggctgaaaagagacaggaatcgttg
gaagcagagcttgtttctcttagggaaagggtgtcagaacttgaaaacgactgtctacaa
aaatctgagcagataaccaatgctgctgcaggaaaagaagatgctcttgtatcagcatca
gctgaaattgcgagtctgagagaagaaagcttagttaaaagttcccaaatcgaagcaatg
aatatccagatgtccactatgaaggatgacttagggaaggaacatgaaaaatggtgtgtt
gctcagagaaattatgaaagacaggttattctgcagtctgaaactattcaagagctgacg
aaaacatcgcaggctttggcttcccttcaagaggaggcatctgaactacgtaaattggct
gattcaaggggaacggaaatttccgagcttaactccaagtggagtgaagagaaatgtatg
ctagagcagcaaaagaatcaagcggagaagatgtatcatgaacttaatgaacagaacaaa
ttactgcatagccgacttgaggctatgcatcttcgctcggctgagaaagatagccgttct
ggaaacctatcatctggaagcattgactcggatcaacttggagattctggtttgcaaagt
gtagtcaattatttgcgcagaacaaaggaaatagctgaaacagaaatatcacttatgaga
caggaaaaattacggttgcaatcgcaacttgagagtgccttgaagatggcagaatctgcc
cggggttcacttaatgctgagcgtgccagtacaagggcctcattattgactgaggatgaa
atcaaatctcttcagctccaggttagtgaggtgaacttgctccgtgaaagcaacatgcaa
ctcagggaagaaaacaaacacaacttcgaggagtgccagagattgcgtgaggtagcccaa
aaggctaagacggattccgaaaacttggaaaatctattgaagcaaaagcaaaccgagtta
gacttgtgtataagcgagatggaaaggctaaggaaggagtccgatcttgaaaaaaagagg
gtggatgagttgagagagacttataaaaacattgatgttgctgactacaatcgcctcaaa
gttgaagtgcggcaactcgaggagaaactgaaagcgaaagataatcatattgaaggtttc
aagaagcttctgttagagaagcagaataagatatcgcaactagagaaggatctaacaaac
tgtaaaaacgatctgagtgagagggagaaggatctaacaagatgcaaagccgaactgagt
gagaaggagaaaacgttagactcttctcagcaagcacaggcgactatggagtcagactct
gagaagctgaaagcagagatcacaagggtcaagagatcttataccttcatgaagaaaaag
ctcgaaaaagaaagggacgatttgaacagtgataatcagtcactctctaaacagttagag
gaagccaaagaggctggaaagagaacaacaactgatgctacggtggagcaggccgttaag
gagagagatgaaaaagaacaaaaaattcagatattggataaatatcttcattcactgaaa
gatgacctgaagaagaaggatgacgaattaacaaaagagaaaacagaacgcaagtctgtt
gagaaggtacttgaagactccttggccaacattaaaaaggagaaaacaaaagtggatgaa
gagcttgttaagctcgagaggtatcagacggcattggctaacctctctgaagaattggac
aaattgaagcaggcggatggaaatcttccagagggtacttcagctgtccaggttctctct
ggaagcgtattgaatgaccaagccgctgcctacgtatcagctgttgactcttttgagcgc
gtggctcgtacttttgtcctcaattctcaaggtagcaccaaatctaccgatatggttact
gaagcttcccctgctacagttgagccttcagccactgccagagcttcttcgtcaaaagca
ccggtggcgactacgcagcagcaactcaaagtgaagagattgactttgcagaaaccaaac
gctgaactccgcagagggaggattattcgtccccagcttggcaaaccagaggaacctccg
caagttgatactgagatgccagaagctgaaggagctggtggtgaaggaaaacagccttcc
tccaatgtcacagagagtcaaggaaccactgttgtgccgcctgttcagacacatgtccgt
aaacgccaggccgattcgttggcttctgagccaccgcaagcgactcaaggggaagctagt
accgagattgtaccacctgcgtttaagaaggcaaaaggatcggagacagaaccagatact
gccgaaggtgaaaatctctctaaagagccagacatggatgaaaccatggatgctaccaat
gctgccgaagatgacaatgaagaaacagaagctgagactgcagatgaggaaactatggaa
gcacaacaagaaactgaagctgaagaagggcaggataaaactgatgaaccagtagaagaa
aatccaaccaagacagaaaccatccctaccgaagaagagtttaaggatcagaccgaacaa
gagaatcaagatctggcagatgcggaatttgataaagaagaaggcgagctcgatctagat
acactggaagatctcgaagagcctacggatgtagctactacacccatgcagtcacctatt
aggatggagacaacaatggaggaagctgaaacaaccattgaaccaccactagaagatgtt
aagaacgacgaaggaggtgatgtagctgttgaagaagcctctgataaacccaacaatggt
aataatcaacaagtagctgaaaccgatctcaagccagagaccacctctgcatctgccact
ccacccacttcctctactccagaaactgaagaaacgaaaagaaaccgatctcaagtagca
gagaccacagtagctacaactgtctctgcatctaccactccagcatctgcaggtgcgagc
gaaaccccagaaactagtgaagaaacgaaaagagcagcgtcgccaagtaggactattaat
atagctgataaagcaaaggagaaagcagctataagacaagccggagtagccgctttagga
ggaacccgaactccctcaccagccaaccgagctccttcaccacccgctcctagaggtcgt
ggtcgcattgtaaacactcgaggaggcggtcgagtgaattctcgtggtggccgaaccaca
cgcggtggacgtggaccacccccgagccagccgtga
DBGET
integrated database retrieval system