Brassica rapa (field mustard): 103832610
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Entry
103832610 CDS
T03449
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103832610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
brp03041
]
103832610
03009 Ribosome biogenesis [BR:
brp03009
]
103832610
Enzymes [BR:
brp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103832610
Spliceosome [BR:
brp03041
]
Complex A
U1 snRNP components
U1 related factors
103832610
Complex B
103832610
Ribosome biogenesis [BR:
brp03009
]
Eukaryotic type
Pre-60S particles
Helicases
103832610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
103832610
NCBI-ProteinID:
XP_009106904
UniProt:
M4EQ13
LinkDB
All DBs
Position
A08:complement(656111..659873)
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AA seq
499 aa
AA seq
DB search
MSRYDSRTGDSTSYRDRRSDTGFGGASGYGSSASKRESSSVGDESPKKPDLDGLTPFEKN
FYVESPSVAAMTEAEVEEYRKKREITVEGRDIPKPVKSFRDVGFPDYVLEEVKKAGFTEP
TPIQSQGWPMALKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPILAPGDGPIVLVLAPTR
ELAVQIQQEASKFGSSSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMMESNNT
NLRRVTYLVLDEADRMLDMGFDPQIRKIVSHIRPDRQTLYWSATWPKEVEQLSKKFLYNP
YKVIIGSSDLKANRAIRQIVDVISESQKYNKLVKLLEDIMDGSRILVFLDTKKGCDQITR
QLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPIMTATDVAARGLDVKDVKYVINYDFP
GSLEDYVHRIGRTGRAGAKGTAYSFFTAANARFAKELVSILEEAGQKVSHELASMGRSTA
PPPPGLGGFRDRGSRRAWS
NT seq
1500 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgctacgatagccggaccggtgactctacctcctaccgtgaccgtcgaagtgac
acagggtttggtggagcctcgggatacggaagctcagctagtaaaagggagagtagtagt
gttggcgatgagtctccaaagaagcctgatttggatggtttgactcctttcgagaagaac
ttttatgttgagtctccctctgtggcggctatgacggaggcggaagtggaggagtatcga
aagaagagggagattactgttgaaggtcgtgatattcctaaacctgtcaaaagctttcgt
gatgttggctttcctgattatgttttggaagaggttaagaaggctggttttactgaacct
acacctatacaatcacaaggatggccaatggcgttgaagggacgtgatctcatcggcatt
gctgaaactggctctggaaagactctttcttacttgctacctgctatagtccatgtgaat
gctcaaccaattttagctcctggagacggtccaatagtcttggttcttgctcctacacgt
gaactggctgtgcagatacagcaagaagcgtctaagtttggttcatcgtcaaagattaag
agcacttgcatttacggtggtgttccaaaagggcctcaagtgcgtgatctccagaaaggt
gtggagattgttatagctactcctgggaggttgattgacatgatggagtcgaacaacaca
aacttgcgaagggttacttatcttgttttggatgaggctgatcgaatgctggatatgggg
tttgaccctcagatcaggaaaattgtttcacatattcggccagaccgtcaaacattgtac
tggagtgctacttggcctaaggaagtggaacaactctctaagaagtttctttacaaccca
tacaaagtgataataggatcttctgatttaaaggctaaccgtgcaatccgtcagattgtt
gatgtcatctccgaaagccaaaagtacaacaagttggtgaagttgcttgaagacataatg
gatggaagcaggattcttgtcttccttgacaccaaaaagggctgcgaccaaatcactcgt
cagcttcgcatggatggttggcctgctttgtcaatacatggtgataaaagccaagccgag
agagattgggttctctcggagtttagatcaggcaaaagccctataatgactgctacagac
gttgcagctcgtggactagatgttaaggatgtgaagtatgtgataaactatgacttccct
ggatcactggaagattatgttcacaggattggacgaactggtagagccggggccaaagga
acagcttacagtttcttcacagctgcaaatgcgaggttcgccaaagagcttgtcagcata
ctagaagaagctgggcagaaagtgagccacgaattagcttcaatgggtcgcagcacagct
cctcctcctccagggcttggaggatttagagaccgtggaagcagaagagcttggagttga
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