Brassica rapa (field mustard): 103833252
Help
Entry
103833252 CDS
T03449
Name
(RefSeq) uncharacterized protein LOC103833252 isoform X4
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
brp
Brassica rapa (field mustard)
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
brp04131
]
103833252
Membrane trafficking [BR:
brp04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
103833252
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS13_ext_chorein
VPS13_mid_rpt
Chorein_N
Vps62
VPS13_VAB
C2
Motif
Other DBs
NCBI-GeneID:
103833252
NCBI-ProteinID:
XP_018509312
LinkDB
All DBs
Position
A08:3530348..3560730
Genome browser
AA seq
3315 aa
AA seq
DB search
MFEAHVLHLLRRYLGEYVHGLSTEALRISVWKGDVVLKDLKLKAEALNSLKLPVAVKSGF
VGTITLKVPWKSLGKEPVIVLIDRVFVLAYPAPDGRTVKEEDMEKFLETKLQQIEEAESA
TLEARAKSKLGSSPAGNSWLGSLIATIIGNLKISISNVHVRYEDSTSNPGHPFASGITLA
KLAAVTMDEEGNETFDTSGALDKLRKSLQLERLALYHDSNSSPWEMEKQWDDISPVEWVE
MFEDGIKEQTAHNIKSKWALNRRYFLSPINGSLKYHRLGNQERNNQEIPFERASVNLNDV
NVTITEEQYHDWIKLVEVVSRYKTYMEISHLRPMVPVSEAPRLWWRFASQASLQQRRLCY
RFSWDSIHHFCRLRRRYIQLYANFLQLSSNANNPEMREIEKDLDSKVILLWRLLAHAKVE
SVKSKEAAEQRKLKKGGWFSFKWRTESEDDPEADTVAEGSKSMEEGLTKEEWKAINKLLS
HQPDEEMNLYSGKDMQNMTHFLVTVSIGQGAARIVDINQTEVLCGSFEQLDVTTKFRYRS
TQCDVSLRFYGLSAPESSLAQSVSSERKTNALMASFVKSPIGENIDWRLSATISPCHATI
WTESYDRVLEFVKRSNAISPTVALETAAVLQMKLEEVTRRAQEQLQIVLEEQSRFALDID
LDAPKVRIPLRASGSSKCSSHFLLDFGNFTLTTVDTRSEEQRQNLYSRFCISGRDIAAFF
TGCGSDNKGCSLLMEDFTNQPMVPPILEKGDSVYSLIDRCGMAVIVDQIKVPHPSHPTTR
ISIQVPNIGVHFSPTRYMRIMQLSDILYGAMKTYSQTPLDDIPDGIQPWSPADLVSDARI
LVWKGIGNSVATWQPCHLVLSGLYLYTYESEKSLDYQRYLCMAGRQVFEVPPENVGGSPY
CLAVGLRGTNLKKALESSSTWIIEFQGEEKAAWLRGLVQATYQASAPLSGDVLGHTRDGD
GDFHEPQTGNLKAADLVINGALVETKLYLYGKIKDECDEKVEEVLLLEVLAAGGKVHMIS
SESGLTVRTKLHSLKIKDELQQSGSAQYLAYSVLKNEYIQDPRRCDAYDKEMSVGHADDE
DAFTDALPEFLSPTEPGTPDMDMIQCSMMMDSDEHVGIEDAEGGFHEKDTSQGKGLCDEV
FYEVQGGEFSDFVSVVFLTRSSSSPDYNGIDTQMSIRMSKLEFFCSRPTLVALIGFGFDL
SAATYVEDDKDANNLAFEKSGSEKEAKDEGGRIEGLLGYGKDRVVFYLNMNVDSVTVFLN
KEDGSQLAMFVQERFVLDIKVHPSSLSIEGTLGNFKLCDKSLDSGNCWSWLCDIRDPGVE
SLIKFKFNSYSAGDDDYEGYDYSLSGRLSAVRIVFLYRFVQEVTAYFMGLATPHTEEVIK
LVDKVGGFEWLIQKYEIDGATALKLDLSLDTPIIVVPNDSLSKNYIQLDLGQLEISNEIS
WHGCPEKDPSAVRVDALHAKILGLNMSVGINGSIGKPMIREGQGLDIFVRRSLRDVFKKV
PTLSVEIKIDFLHGVMSDKEYDIIVSCTTMNLFEEPKLPPDFRGNSPGPKDQMRLLVDKV
NLNSQTIMSRTVTILAVDINYALLELRNSVSEESPLAHVELEGLWVSYRMTSLSETDLYV
SVPKVSVLDIRPNTKPEMRLMLGSSVDASKQVSSESFPFSLNKGSFKRANSRAVLDFDAP
CSTMLLMDYRWRASSQSCVLRVQQPRILAVPDFLLAVGEFFVPALRAITGRDETMDPTND
PITRRSGIVLYEALYKQIEEVVYFSPCRQLVADSLGVDEYTYDGCGKVISLSEQGEKDSN
SGRLEPIIIVGHGKKLRFVNVKIKNGSLLSKCVYLSNDSSCLFSPEDGVDISMLENTKSN
SESVLSNAHKSSDVSDACQSDLKAGQNFTFEAQVVSPEFTFFDGTKSSLDDSSAVEKLLR
VKLDFNFMYASKENDIWVRALLKNLVVETGSGLIILDPVDISLGYTSVKEKTNMSLTSTD
IYIHLSLSALSLLLNLQSQVTGALQSGNAIPLASCTNFHRIWVSPKENGPRNNLTIWRPQ
APSNYVILGDCVTSRAIPPTQAVMAISNTYGRVRKPTGFNCIGLFSVIQGSGGDNGQHSI
DSDECSLWMPVAPAGYTAMGCVANLGSEPPPDHIVYCLRSDLVSSSSFSECIYTVPSNSL
FESGFSIWRADNVLGSFYAHSSTAAPSKQYSPGLSHCLLWNPLQMKTSPISDSSPTGGSQ
SEQTSDQTGNSSGWDIVRSISKPTSYHVSTSNFERIWWDKGGDLRRPVSIWRPIPRPGFA
ILGDSITEGLEPPALGILFKADDSEIAAKPVQFSKVAHIVGKGLDEVFCWFPVAPPGYVS
LGCVLSKFDEAPRVDSFCCPRIDLVNQANIYEASVTRSSSSKSSQSWSIWKVDNQACTFL
ARPDLKRPPSRLAFAVGESVKPKTQENVNAEIKLRCFSLTLLDGLHGMMTPLFDTTVTNI
KLATHGRPEAMNAVLVSSIAASTFNPQLEAWEPLLEPFDGIFKLETYDTALSQSSRPGKR
LRIAATNILNLNVSAANLETLGDTVVSWRRQLELEERAAKMKEESGVSRESGDLSAFSAL
DEDDYQTIVVENKLGRDIYLKKLEENSDVIVKLCHDENTSVWVPPPRFSNRLNVSDSSRE
ARNYMTVQIVEAKRLHIVDDGNSHNFFCTLRLVVESHGAEPQKLFPQSARTKCVKPSTTV
INDLMECTSNWNELFIFEIPRKGLARLEVEVTNLAAKAGKGEVVGSLSFPIGHGENTFRK
VASVRSLYQSSDAENISSYTLQRKNAEEIHDNGCLLVSTSYFEKTTIPNTLRNMESKDFA
DGDTGFWIGVRPDDSWHSIRSLLPLSVAPKSLQNDFIAMEVSMRNGRKHATFRCLATVVN
DSDVNLEISVSSDQNVSSGPSNHNALIASRSSYILPWGCLSKDNEQCLHVRPRVDPPHHS
YAWGSCIAVSSGCGKDQPFVDQGLLTRQQTFKQSSRPASFVLKLNQLEKKDMLFCCQPAT
GSKPFWLSIGADASVLHTDLNTPVYDWKISINSPLKLENRLPCPVKFTVWEKTKVGTYLE
RQHGVVSSRKLAHVYSTDIQRPVYLTLAVHGGWALEKDPIPVLDLYSSDSVTSFWFIHQQ
SKRRLRVSIERDVGETGAAPKTIRFFVPYWITNDSYIPLGYRVVEIEPSENVEAGSPCLS
RAPRSFRKNPGFSMERRQQRKNVRVLEVIEDTSPMPSMLSPQESAGRSGVVLFPSQKDSY
VSPRIGIAVAARDSEIYSPGISLLELEKKERIDVKAFCSDASYYKLSAVLNMTSDRTKLA
MHYLVQPSLSLSCFL
NT seq
9948 nt
NT seq
+upstream
nt +downstream
nt
atgttcgaagctcatgtgttacatctgcttcggaggtatttgggtgaatatgtgcatgga
ctctccacagaggctctgcggattagtgtctggaaaggggatgttgttcttaaagacttg
aagttaaaggcggaggctttgaactcactgaaacttccagtcgctgtcaaatccggtttt
gtcggaaccatcactttgaaggtcccttggaaaagtttaggaaaagagccagtcatagtt
ctgatcgaccgtgtctttgttcttgcttatcctgcccctgatggccggacagttaaggaa
gaagacatggaaaagtttctagaaaccaagcttcagcagatcgaggaagcggaatcagca
actctagaagcaagagcaaaatctaagctgggaagttctccagcaggaaattcatggcta
ggttcgcttattgctacaattattggtaatctgaaaatatccatcagcaatgtgcatgtt
agatacgaggattcgaccagtaatccagggcacccgtttgcttcgggcatcaccttggcc
aagctcgcagctgttacaatggatgaggaaggaaatgagacatttgacacaagcggtgct
ttggataaactgcgtaagtccttgcagcttgagaggcttgctttgtatcacgattctaat
agctctccctgggaaatggagaagcaatgggacgatattagtcccgtggagtgggttgag
atgtttgaagatggaataaaggagcaaaccgcgcataatataaagtcgaaatgggccttg
aatcgtcgatactttttgtcccctattaatggatctcttaagtatcaccggttaggaaat
caggagagaaataatcaggagattccatttgaaagagcgtcagttaacctaaatgatgtt
aacgtcacaatcacagaggagcaatatcacgactggataaagctagtcgaagttgtttca
agatacaaaacatacatggaaatttcacatttaaggcccatggttcctgtttcagaggct
ccacgtttgtggtggcgctttgcttctcaagctagtttgcaacaaaggagactatgctat
cgattttcctgggatagcattcaccatttttgtcggttacgtcggcgctatattcagctg
tatgccaactttctgcagctgtcatcaaatgccaacaaccctgagatgagagaaatcgaa
aaggaccttgattccaaagtgattcttttgtggaggttacttgcacatgcaaaggttgaa
tctgtaaaatcaaaagaagctgccgagcagagaaagctgaaaaagggtggttggttctca
tttaaatggcggacagaatctgaagatgacccggaggctgatactgtggctgagggatca
aaatcgatggaggaaggattgactaaggaagaatggaaggccataaataagttactgagt
catcagcctgacgaagagatgaatttatattcaggaaaagacatgcagaatatgactcac
tttcttgtaactgtatcaattggacaaggtgcagctaggattgttgatataaaccagact
gaggtgctgtgtggtagctttgagcaactcgatgtgacaacaaagttcagatatcggagt
actcagtgtgatgtatcactgaggttctatggcttatctgcaccagagagttcgcttgca
cagagtgtatccagtgagagaaagacaaatgccttgatggctagttttgtgaagtcacct
attggagagaacattgattggaggctatcagcgacgatatccccttgtcacgctacgatc
tggaccgaaagttatgatcgtgtattggagtttgtgaagcgaagtaacgcaatcagccct
accgttgcactggaaactgctgctgtgcttcagatgaaactagaggaagtgactcgacgg
gctcaagagcaacttcaaatagtgttggaggagcaaagcagatttgctctcgacattgat
cttgatgctccaaaagtgagaattcctttgagggcttcaggatcttccaagtgcagtagc
catttccttttggactttggtaattttactctaaccacggtggatactcggtctgaagag
caaaggcaaaacttatattctcggttttgcatttccggaagagatattgccgctttcttt
acgggctgtggatctgacaacaaaggttgcagtttactcatggaagatttcactaatcag
ccaatggtgcctcccattctggagaaaggggacagcgtttattcccttattgataggtgt
ggaatggcagttattgttgatcagatcaaggtacctcacccaagtcacccaaccacaaga
atttccatccaagtgccaaatattggtgttcatttctcgccaacaagatatatgaggatc
atgcaactgtccgatatcttgtatggtgcaatgaaaacctacagtcaaactcctcttgat
gacatcccagatggaatccaaccttggagtcctgcagatcttgttagtgatgctagaatt
ttagtttggaagggaattggcaactctgttgctacttggcagccttgtcaccttgttttg
tctggtttatatctgtatacatatgaatcagagaagtcacttgattatcaacgttattta
tgcatggctggcagacaagtatttgaggttccgcccgaaaatgttggtggttctccttac
tgccttgctgtcggtctaaggggaacgaatcttaaaaaggccctggaatcttctagcacc
tggatcatagagtttcagggggaggaaaaggcagcatggctgagaggacttgtccaagca
acctatcaagcttctgctcctctgtcgggggatgtacttggtcatacacgtgatggtgat
ggtgacttccatgaacctcagactgggaatttgaaagctgctgatcttgttattaatggt
gctttagttgagacgaagctgtatttgtatggaaagatcaaggatgaatgtgatgagaag
gttgaagaggtcctgcttctcgaagttcttgctgccggaggaaaggtccacatgataagt
tcagagagtggcttaaccgttaggacgaagttgcattctctaaaaatcaaagatgaactt
cagcagtcaggaagtgctcagtatttggcttactctgttctgaagaacgaatacatacaa
gacccaagaagatgtgatgcttatgacaaggagatgtctgtaggacatgcagatgatgaa
gatgctttcactgatgctttgccagagtttctgtctcctacagaaccaggtactcctgat
atggatatgattcaatgcagcatgatgatggactctgatgaacatgtggggatcgaggat
gctgaaggtggatttcatgagaaagacacatctcagggaaaaggcctttgcgatgaggta
ttttatgaagtgcagggtggtgaattttctgatttcgtatcagttgttttcttgacgagg
agctccagttcccccgattataatggaatcgacacacagatgagcattcgcatgtcaaaa
ctggagttcttttgcagtagaccaactctagttgctttaattggttttggatttgacttg
agtgctgcaacatatgttgaagatgataaagatgccaacaatctggcttttgagaaatct
ggtagtgagaaagaagcaaaggatgaaggtggacgcattgaaggattacttggatatggc
aaggaccgcgtagtgttttacctgaacatgaatgttgatagtgtgactgtgtttcttaac
aaggaggatggttctcagcttgcgatgtttgtacaagaacgatttgtgctggacattaag
gttcacccgagctctctttcaatagaagggactctaggaaattttaaactctgtgacaag
tcgttagactcaggaaactgctggagttggctctgtgacatacgtgatccaggtgttgag
tctcttatcaagttcaaattcaattcatatagtgctggagatgacgactatgaaggatat
gattatagcttatctggtagactatcagctgttcgcatcgtattcctctacagatttgtt
caagaggttacagcgtacttcatgggacttgctactcctcatactgaagaagtcattaag
cttgttgacaaagttggaggctttgagtggctaatccagaaatatgagatagatggtgct
actgcgctgaaactagacctttcactagacactccaataattgttgtccctaatgattct
ctaagtaaaaattacattcaacttgaccttggtcagctggagatatcaaatgaaataagc
tggcatgggtgtccggagaaagatccaagtgctgtacgtgtagatgcccttcatgcgaag
attcttggactaaatatgtcagtaggcataaatggatcaattggtaaaccaatgatacgt
gaaggccagggactggacatttttgtccgccgcagcctacgagatgtttttaagaaagta
ccaacactttcagttgagatcaagattgatttcttgcatggtgtgatgtctgacaaagaa
tatgatattattgtaagttgcacaaccatgaatttgtttgaggagccaaagctacctcca
gattttcgtggtaacagtcctggtcccaaagatcaaatgcgtctgctggttgacaaagtg
aacttgaatagtcagacgataatgtcacgtacagttacaatactggctgtggatataaac
tatgctcttcttgagttacgtaatagtgttagtgaagagtcaccgttagctcatgttgag
cttgaaggattatgggtatcctacaggatgacgtcactatctgagacagatttgtatgtg
tcggttcctaaagtttctgttttagacatccgtcctaacacaaagcctgaaatgcggctg
atgcttggctcatcggtcgatgcttccaagcaagtttcttctgaatcttttccattttcc
cttaacaagggaagttttaagcgggccaactccagggctgttcttgattttgacgcacca
tgttcaacgatgttgctgatggattatagatggcgagcgtcctctcagtcatgtgtttta
cgggttcaacaacctcgtatccttgctgttcctgacttcctccttgcggttggtgaattt
tttgttccagctttgcgtgcaataacaggaagagacgaaacaatggatccaacaaatgat
ccaatcactagacgtagtggcatagttctctatgaggctctctataaacagatagaagag
gtggtgtacttttccccatgtagacagttggtagcagattcactcggggttgatgagtat
acatatgacggatgtggaaaggtaatctcgttgagtgaacaaggagagaaggattcaaac
tcaggaagattagaacctatcataatcgtcgggcatggaaaaaagttgcggttcgtaaat
gtaaaaattaagaatgggtcgctcctgagcaagtgcgtttacttgagtaacgatagtagc
tgcttattttccccggaagatggtgttgatatctcaatgttagaaaacacgaaatctaat
tctgagagtgtgcttagcaatgcgcacaaatcgtcagatgtttcagatgcttgtcaatcc
gatttgaaggctggccagaattttacctttgaagctcaggttgtttctcctgaattcaca
ttctttgatggcacaaaatcctccctggatgactcctctgctgtagaaaagcttttgcga
gttaagttggattttaatttcatgtacgcctcaaaagaaaatgacatctgggttcgagct
ttgctaaagaacctagtggtggaaactggttctggtcttatcattcttgatccagtcgat
atttctttgggatacacttctgtcaaagaaaaaacaaatatgtccttaacgtcaactgac
atatacatccacctttctttgagtgctctttccctcctactgaatctgcagagccaagtg
actggagctttacaatctggaaatgctattcctttagcttcatgcactaacttccacagg
atttgggtttcaccaaaagaaaatggacccaggaacaatctcacaatttggaggccgcaa
gctccttcgaactatgttatattgggagattgtgtgacgtcgagggcaattcctcctaca
caagcagtgatggcaataagtaatacatatgggcgcgtacggaagcccactgggtttaat
tgtattggcctgttctctgttattcaaggttcaggaggggataatggtcaacattctatt
gatagcgatgaatgctccctctggatgcctgtagctcctgcaggatacactgctatgggg
tgtgttgcaaatttaggaagtgagccaccaccagatcacattgtttattgtctaaggtct
gaccttgtatcttccagcagtttctctgagtgcatatacacggtgccctccaattcatta
tttgagtctggattcagcatatggcgtgctgataatgttcttggatcattttatgctcac
tcttcaactgcggctccttccaaacaatatagtcctggcctcagtcattgtcttctttgg
aatccccttcagatgaagacatctccaatctctgactcatcacctacaggtggctctcag
agtgagcaaacaagtgatcagactggaaattcatcaggatgggacattgtcaggtcaatt
tctaagccaactagttatcatgtttcaacttctaattttgagagaatatggtgggacaag
ggtggtgatcttcgtagacctgtctcaatatggaggcctataccacgtcctggttttgcc
atattgggtgatagcataactgaagggttggagccacctgcacttggaatactctttaaa
gcagatgactctgagattgctgcaaaacctgtgcagtttagtaaagtcgcacatattgtg
gggaagggtttggatgaagttttctgctggtttcctgttgcccctcctggctatgtttct
ctaggatgcgttctttctaaatttgatgaggctccacgtgtggattcattctgttgtcct
aggattgatcttgttaaccaggctaacatttatgaagcttctgttacaagatcctcaagt
tcaaagtcttctcaaagttggagtatttggaaagttgacaatcaggcatgcacttttctt
gcacgtcctgatctaaaaaggcctccaagtcgactggcttttgctgttggagaatcggta
aagccgaaaacacaggaaaatgtaaatgcggaaattaagctgagatgcttctctttaacg
ctactagatggcttacatggaatgatgactcctctctttgacacaactgtcaccaatatc
aagctagcaactcatggtcgtccagaggccatgaatgcagtactcgtttcctcaatcgct
gcttcaacatttaacccacagttggaagcgtgggagcctcttctggagccatttgatgga
atattcaagttggaaacatatgacactgcattgagtcaatcatcgagaccaggaaaacgg
ttgcgcattgctgctactaacattttaaacctaaatgttagtgctgcaaaccttgaaact
cttggtgataccgttgtttcctggagaaggcaattagaacttgaagaaagagcggccaaa
atgaaagaggaatcaggtgtttctcgtgagagtggagatctttcagctttttcagctctc
gacgaagatgattatcagaccattgtggtagagaataaacttggccgtgacatatatctg
aaaaagctggaggagaactcagatgtaattgtaaaattgtgtcacgatgaaaacacttcg
gtctgggttccaccgccaaggttctccaataggttaaatgtttcagacagttctagagaa
gcacgcaattacatgactgtacagattgttgaggctaagcgcttgcatatcgtcgatgat
ggcaacagtcacaatttcttttgcaccctgcgcctcgttgttgagagtcacggtgctgaa
ccacaaaagctttttcctcagagtgctaggaccaagtgcgtgaagccttccactacggtt
atcaatgacttgatggagtgcacttccaattggaatgaactattcatttttgaaatccca
aggaagggattggccaggttggaggttgaagtaacaaaccttgctgctaaagctggaaaa
ggggaggtcgtcgggtcgctttcatttcctattggacatggggaaaatacatttagaaag
gtagcttcagtaaggtcgttatatcaatctagtgatgctgagaatataagttcctatacg
cttcagagaaagaatgccgaagaaatacatgacaatggatgcttgcttgtttcaacatct
tatttcgagaagactacaatccccaacacactaagaaatatggaaagtaaggattttgcg
gacggagacactggtttctggattggagttcggcctgatgactcatggcatagcattcgt
tcgctgcttccgctttctgtcgctccaaaatcattacaaaacgattttattgcaatggaa
gtttctatgagaaacggaagaaagcatgcaacattcagatgtttagcgacagttgtgaat
gattcagatgtcaatttagagatatccgtatcttctgatcagaatgtctcttcagggcca
agcaatcataatgctttgattgcctctagatcgtcctatattttaccatggggatgttta
tcaaaggataatgaacagtgcctgcatgtccggccaagggttgacccccctcatcattct
tatgcatggggtagttgcatcgccgtgagctctggttgtggaaaagatcaaccatttgtt
gatcaaggtttgcttactcggcagcaaacttttaagcaaagcagcagaccagcttctttt
gtattgaaattaaatcagcttgagaagaaggatatgcttttttgctgccagcccgctact
gggagtaagccattctggctcagcattggagcagatgcctcagttcttcatacagacctc
aatacacctgtttatgattggaaaatttctattaattctcctctgaagctagaaaataga
ctcccttgcccagtcaaattcacggtgtgggaaaagacaaaagtaggcacatatcttgag
agacaacatggtgtagtatcttcaaggaagcttgctcacgtatattcaacagatattcag
agacctgtgtatcttacattagccgtccatggtggttgggctttggaaaaggatcccatt
cctgttttagatctatattcaagtgacagtgtgacatctttttggttcatccatcaacag
agcaaaaggagactacgtgtaagtatagaacgtgatgttggagaaacaggggctgcacca
aagactataaggttctttgtgccatactggattacaaatgattcatatattccgctaggc
tatagagtggtggagattgaaccttcagaaaatgtggaagctggctctccctgcctgtct
agggctcccagatcttttaggaaaaatcctggattttcgatggagaggagacaacagagg
aaaaatgtccgagtgctcgaggttattgaggatactagtcctatgcctagcatgctttct
ccacaagaatcagctggtcggagtggcgttgtgctgtttccttctcagaaggattcttat
gtttccccacgaattggtattgctgtagcagctcgggattctgagatctacagtcctgga
atttctcttcttgagcttgagaagaaggaacgtatagatgttaaggctttctgctcagac
gcctcgtactacaagctctcagcagtgttaaatatgacgtcggacagaacaaagcttgca
atgcattacttagttcagccttcgctttctctctcgtgttttctgtga
DBGET
integrated database retrieval system
