Brassica rapa (field mustard): 103833411
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Entry
103833411 CDS
T03449
Name
(RefSeq) probable pectate lyase 15
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp00040
Pentose and glucuronate interconversions
brp01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
103833411
Enzymes [BR:
brp01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
103833411
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Paralog
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
103833411
NCBI-ProteinID:
XP_009107745
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Position
A8
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AA seq
451 aa
AA seq
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MASPSQKLTSVCLAVIVLLALTATIFRKLEIPSSRKLKTEELRSAKNNSTMAAKRVKGVE
LNEQHAVSDPDRVADEVASLVQMSEHNKTARRKLGFFSCGTGNPIDDCWRCDPNWHKNRK
RLADCGIGFGRNAIGGRDGRFYIVTDPTDDDVINPKPGTLRHAVIQEEPLWIVFKRDMVI
ELKQELIMNSFKTIDARGSNVHIANGACITIQFITNVIIHGLHIHDCKPTGNAMVRSSPS
HFGWRTMADGDAVSIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITVSNNHFTHHNEVML
LGHSDSYTKDKLMQVTIAYNHFGKGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAEPT
INSQGNRYAAPMDRFAKEVTKRVGTDASDWKKWNWRSEGDLLLNGAFFRASGAGTSASYG
RASSLAAKPSSMVRTITSTAGALGCRKGRPC
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgccttctcagaaactgacctctgtttgcttggccgtcatcgtcctcttagct
ctcaccgcaacgattttccggaagcttgaaatccctagctccaggaagctgaaaacagag
gagctgcggagcgcaaagaacaactcgacaatggctgcgaaaagggttaaaggtgtggag
ttgaatgaacaacacgcggttagtgatccagatagggtcgctgatgaagtcgcttcgctt
gttcagatgagtgaacataacaagacagcaaggaggaagctaggattcttctcttgtgga
accggtaatccaatcgatgactgctggcgttgtgaccctaactggcataagaaccgtaag
cgactcgccgattgtgggattggttttggacgcaacgcaattggtggtcgtgatggacgc
ttctacattgtcactgaccccactgatgatgacgttattaaccccaaaccaggaactcta
cgccacgctgttatccaggaggagcctctgtggatcgtgttcaagagagacatggtgatt
gagctgaagcaggagctgattatgaacagtttcaagaccattgatgctcgtggctccaat
gtccatatagccaatggtgcttgcatcactatccagtttatcaccaatgttatcattcat
ggtcttcacattcatgactgcaaacctactggaaacgcaatggttagaagctccccatct
cattttggttggaggacaatggctgatggcgatgcagtctctatctttggatcctctcat
atctggattgatcataactctctctctcactgtgctgatggccttgttgacgctgtcatg
ggttccactgctattaccgtatccaataaccactttacacaccacaatgaggtgatgttg
ctaggccacagtgattcgtacacaaaagacaagctgatgcaagtgaccattgcttacaac
cattttggaaaaggactggttcagagaatgccaaggtgcagacatgggtatttccatgtg
gttaacaacgactacacacactgggagatgtatgccattggtgggagtgcagagccaacc
atcaacagtcaaggaaacagatatgctgctcctatggatcgtttcgccaaggaggtaacg
aaaagagtagggacggatgcaagtgactggaagaagtggaactggaggtcggaaggagat
cttctactgaatggagcattcttcagggcatcaggagcaggaacttcagctagctatgga
cgagcctcaagcttagcagctaaaccatcatcaatggtccgtactataacctctactgca
ggagcactaggttgccgcaaaggcaggccttgctag
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