Brassica rapa (field mustard): 103833493
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Entry
103833493 CDS
T03449
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 16
KO
K14810
ATP-dependent RNA helicase DDX56/DBP9 [EC:
5.6.2.7
]
Organism
brp
Brassica rapa (field mustard)
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
brp03009
]
103833493
Enzymes [BR:
brp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103833493
Ribosome biogenesis [BR:
brp03009
]
Eukaryotic type
Pre-60S particles
Helicases
103833493
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
103833493
NCBI-ProteinID:
XP_009107860
UniProt:
M4D514
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All DBs
Position
A01:complement(1707560..1710722)
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AA seq
624 aa
AA seq
DB search
MGKAKFKPADDVKPEVEEAEEVEEQRDGGEVAEEEEEEKEKSFEELGLDPRLIRALSKKG
IEKPTPIQQTAIPYILEGKDVVARAKTGSGKTLAYLLPLLQKLFSDSGRKKKPAPCAFVL
VPSRELCQQVYTEVSWLIELCRVQIKAVQLTSSMPVSDMRNALAGLPEILVTTPACIPKC
FADGVLDPAAISESLEILVLDEADLLLSYGYEDNLRSVTSIVPRRCQCLLMSATTSSDVE
KLKKLILHNPVVLTLQEGSDKEEPVPSNVQQFWISCSAQDKLLHILALLKLEVVQKKVLI
FINTIDMGFKLKLFLEKFGIKTAILNGELPQNSRLHILEQFNAGLFDYLIATDDNNQTKE
KEEVKGDDNKDNKKNKRRFKPKLDAEFGVVRGIDFKKVHTVINYDMPQSVTGYIHRIGRT
GRAYSSGSSVSLVSPNEMEGFEEIKSFLAGEEDKDSDIITPFPLLTENAVESLRYRAEDV
AKSVTKISIRESRAQDLRNEIINSEKLKSHFEANPRDLDLLKHDKLLSKTAPSPHLRDIP
EYLVDAKTQEASKMVKLARAAMGNSRRSGGGNNTKKKRSRKGSDPLKTFSANGSKRGRGG
GGVGQKKDGKGSSDGSANKKQKTV
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaggcgaagtttaaacctgcggatgatgtgaaaccggaagtggaagaagctgag
gaagttgaagaacagagagacggcggagaagtagcagaagaagaagaagaagagaaagag
aagagctttgaggagctagggcttgaccctcgtctcattcgcgctttatctaaaaagggt
atagagaagccaactcctattcagcaaacagccattccttacatcctggaagggaaagat
gtggttgctagagctaagactggctcagggaagaccttagcttaccttcttcccttgctt
cagaagctgttttcagactctgggaggaagaagaagcctgctccttgtgcttttgttctc
gttccttctcgagagttgtgtcagcaagtctacacggaggtttcttggcttattgagctg
tgtcgtgttcagattaaagctgtgcagttgactagtagcatgcctgtttctgatatgcgt
aacgcgttggctggcttgcctgagattcttgtcaccacacctgcttgtattcctaagtgt
tttgcagatggagttttagatcccgcagctatcagtgaatcgcttgagattttggttctt
gatgaggcagatcttttgttgtcctatgggtatgaagacaatctaaggtcggtaacgtca
atagttccaagacgttgccaatgcctacttatgtctgctaccacaagttctgatgttgag
aaattgaagaaattgattctgcacaacccggtagtcttgaccttgcaagaaggttctgac
aaggaagagcccgtcccaagtaatgttcagcagttttggatttcttgcagtgctcaggat
aaactactacacattcttgctctcctgaagctagaggttgttcagaagaaagttctgata
ttcatcaatactattgacatgggtttcaagctgaagctattcttggaaaagtttggaatc
aaaactgcaattttaaacggggagctgcctcagaattctcggcttcatatccttgagcaa
ttcaatgcaggtctatttgattatttgattgcaacggatgataataaccagactaaagaa
aaggaagaggttaaaggtgatgataacaaggataataagaaaaacaaaaggcgtttcaaa
ccgaagctggacgctgagtttggtgtagtcagaggaattgacttcaaaaaagttcacaca
gtcataaactatgacatgcctcaaagtgtgacaggatacattcatcgaattggacgtact
gggagagcatatagcagcggttcttccgtttctcttgtttctcctaatgagatggaaggg
tttgaagaaatcaaatccttcctagcaggcgaagaggacaaggatagtgatatcatcact
cccttccctttgttgactgaaaatgctgtcgagtctttaagatacagagctgaggatgtt
gcaaagagtgttacaaagatttcgattcgagaatctcgtgctcaggatttgagaaatgag
ataatcaactccgaaaagttgaagtctcattttgaagctaatccaagagacttggatcta
ttgaaacatgacaagcttcttagcaagactgcgccttcaccgcatctaagagacatccct
gagtatctagttgacgcaaagactcaagaagcgagcaagatggtgaaactagccagagcc
gctatgggaaacagtaggagatccggtggaggtaacaacacaaagaagaaacgatcgaga
aaaggcagtgacccactcaaaaccttcagcgccaacggatccaagagaggacgcggtggt
ggcggtgttggccagaagaaagatggtaaaggatctagcgatggctcggctaacaagaaa
cagaagacagtttaa
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