Brassica rapa (field mustard): 103833613
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Entry
103833613 CDS
T03449
Name
(RefSeq) regulator of nonsense transcripts UPF3 isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03013
Nucleocytoplasmic transport
brp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
103833613
03015 mRNA surveillance pathway
103833613
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brp03019
]
103833613
Messenger RNA biogenesis [BR:
brp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
103833613
mRNA cycle factors
P-body specific factors
103833613
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
Motif
Other DBs
NCBI-GeneID:
103833613
NCBI-ProteinID:
XP_009107940
LinkDB
All DBs
Position
A8
Genome browser
AA seq
466 aa
AA seq
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MKDRSAKRKVVVRHLPPSLSEPDLLSQIDSRFGDSYSWFSFRPGKSNYKTQKHSRAYFGF
KSPEDVYEFAAFFNGHVFVNEKGAQFKAIVEYAPSQRVPKPCDKKDPREGSITKDPEYLE
FLKLIAQPVENLPSAEVQLERREAEQSGASKPAPIVTPLMEFIRQKRATVIGSQGSLDVR
RGGRRSRAVSANKPSSRPSKRISEKKKYVEKDNSKSVRSSKQDNSSTASVMDSSLPGISL
TMESGKKKILLLKKDRDTPVNSPPQPEQQMETNLSSTSRQNQKIDDVGGRLIKGMLVRKE
PRPSQSSTLVQPEPRVEPSEAENYKRPPRADGIYAGKDYHVSGTNSEKQERRPRNRDRPD
RVVWAPLRRSDGSNNSEDQLSSSAANNGDVKQRTLLQRSGDVVNSSDGHSLENGSARYSS
GRVGSRNRKEDGFAVTGEGKSSRRGGGGDPTSYEKQKWIQKSSSGT
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaccggtcagcgaagaggaaggtagttgtacggcacttgccgccttctctttca
gagcccgatctcttatcccaaatcgactctcgtttcggtgatagctacagttggttctcc
tttcgtcctggaaagtccaactataagacgcagaagcattcgcgggcctactttggtttc
aagtccccggaagatgtttatgagttcgctgcatttttcaacggccatgtctttgttaat
gaaaagggtgctcagttcaaggccatagttgaatatgcgccttcacagcgtgtgcccaaa
ccatgtgacaagaaagatcctcgtgaaggctctattaccaaagaccctgagtaccttgaa
ttccttaagctcattgctcaacctgttgagaatctccccagtgctgaagtccagttggaa
agaagagaagccgagcagtctggtgcttcaaagccggctcctattgttacacctcttatg
gaattcatacgtcaaaaacgtgctactgtgattggatctcagggttcattagatgttcga
agaggaggcagaagatcccgagcagtctcggcaaacaagccaagttcaaggccttcgaaa
cgaatctctgaaaagaagaagtatgttgaaaaggacaattcaaaaagcgtccgcagttcc
aagcaagataattcatctacagcctctgtcatggatagctctctcccagggatctcattg
actatggagtccgggaagaaaaagatcttgctcctgaaaaaagaccgagacactcctgtt
aactctccaccacaaccagaacagcagatggaaaccaatctatcctcgacctcaagacag
aaccagaagattgatgatgttggtgggagattgatcaagggaatgcttgtgagaaaggag
ccgcgacctagccagtcttcaactttggtccagcctgagccaagagtggaaccctcagaa
gcagaaaactacaagcgtcctcctcgagcagatggtatatatgcagggaaagactatcat
gtttctggtaccaacagtgagaagcaagagaggcgtcctagaaacagggacagacctgat
cgtgttgtgtgggctcctctccgtcgctctgacgggtccaataacagcgaggaccaactg
tcatcatcagcagcaaataatggagatgtgaaacaacgtacgttgttgcaaagatctgga
gatgtggtgaactcctctgatggacactctcttgagaatggttcagctagatattctagt
ggccgtgttggatctcgcaatagaaaagaagacggctttgcagtgaccggtgagggcaaa
tcatcgcgtagaggaggtggtggtgatcccacttcatatgagaagcaaaagtggatccaa
aaatcatcgtcgggtacttga
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