Brassica rapa (field mustard): 103834415
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Entry
103834415 CDS
T03449
Name
(RefSeq) SWI/SNF complex subunit SWI3D
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
103834415
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
brp03021
]
103834415
03036 Chromosome and associated proteins [BR:
brp03036
]
103834415
Transcription machinery [BR:
brp03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
103834415
Chromosome and associated proteins [BR:
brp03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
103834415
PBAF complex
103834415
GBAF(ncBAF) complex
103834415
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
ZZ
Myb_DNA-bind_6
MEF2_binding
PIF6
Motif
Other DBs
NCBI-GeneID:
103834415
NCBI-ProteinID:
XP_009108732
LinkDB
All DBs
Position
A08:complement(13068305..13072714)
Genome browser
AA seq
964 aa
AA seq
DB search
MDEKRTLALAGDSPASEPSMRRRLKRKANALGTSNSASAKRMLKREKAMLASFSPVHSGP
LTRARQAPSSMPSAAGVKAEVVVGVVGTDGEKLKEEEEERDKAAIREWEAKIEAEFEAVR
SRESNVHVVPNHCGWFSWEKIHPLEERSLPSFFNGKLEGRTPEVYREIRDWIMKKFHSDP
NTQIEVKDLSELEVGDSEAKQEVMEFLDYWGLINFHPFPSSPDASSTPGDHDDLGDKESL
LNSLYRFQTDEASPALVHKPRPTAQATPSGLFPDPVAPDDLLKQEGPAVEYHCNSCSADC
SRKRYHCPTQADFDLCTECFDSGKFSSDMSSSDFILMDSAEAPGVGSGKWTDQETLLLLE
GLEIFKENFNEIAEHVATKTKAQCMLHFLQMPIEDAFLNQFDYKVPSTKDTTDSAVSKDD
KSVQKEAPEETENKNPVKEAETVKKTPETEDDNEGNVPPESSKPGDASEETSEVEAEQKT
LKVETDTDERCKDDADENVALKALTEAFEELGYPITPEASLSFADLGNPVMGLAAFLVRL
AGSDVATASARASINSLKSNSGLLLATRHCFVLEDPLDNKKDSAESKSVDAVGNGDSAHK
DEQPEEKSQKAEGVSLNANDREMTEADSGKENQDSVSEEKQPGSRTKKSARKPDAKGLKK
STNSVATEKSEEPADIICTSQDKCSGKELQEPLKDGNKLSSENKDASQATVSQLAPDASQ
PEASKDVEMKDMSQSQKDPQDMVKTVGEEIEQAKKNAKDVLSMPDTSVAQQAIASPSVPE
NGPDGENTKKEKDVSEETKDKHNTDKLKRAAISALSAAAVKAKHLAKQEEDHIRQLSGSL
IEKQLRKLEAKLSIFNDAESLTVRVKEQLERSRQRLYHERAQIIATRLGAPPSMSSKASL
PTNRTAANLANVAQRPPMGMSFPRPPMPRPPGASPFSVPGSHVAATAMSGSSGPPQGSDN
VSSV
NT seq
2895 nt
NT seq
+upstream
nt +downstream
nt
atggatgagaaacgaaccctagctttggctggagactctccggcatctgagccgtcgatg
cggcggcgtttgaaacgcaaagcgaacgctctggggacctccaattccgcttctgcgaag
aggatgttgaagcgcgagaaggcgatgcttgcttccttttctccggttcacagcgggcct
ttgactcgagctcgacaggcgcccagcagcatgccgtccgcggctggggtgaaggcggag
gtggtggtgggggtggtgggtacggacggggagaagttgaaggaggaggaggaagagagg
gataaagcggcgatccgtgagtgggaggctaagatcgaagctgagttcgaagcagttaga
tctcgcgagagtaatgtacacgtggtgcctaatcattgcggttggttttcatgggaaaaa
attcacccgcttgaagagcgctcattgccctctttctttaacggcaagttggagggtcgt
actcctgaggtgtatagggaaatacgggattggatcatgaagaagtttcattcagatccg
aacacacagatagaagttaaagacttatcagaactcgaggttggagactcggaagcaaag
caagaggtgatggagttcttggactactggggcttaatcaattttcacccattcccatca
tcaccagatgctagttctactcccggcgatcatgatgatttaggggataaggagtctctg
cttaacagtttatatcggtttcaaacagatgaggcttcccctgctcttgttcacaagcct
cgtcccacagcacaagctacgccatcagggttgttcccagatccggtggcgcctgatgac
ttgctgaagcaagagggtccagcggtcgaatatcactgcaactcctgttcagctgattgc
tctcgcaagcgctaccactgccctacgcaggcggattttgacttgtgtacggaatgcttt
gacagtggcaagttcagctcagatatgtcatcttccgactttatactaatggattctgcg
gaggctcctggcgttggtagtgggaagtggactgatcaagagactcttcttctccttgaa
ggcttagaaattttcaaggaaaattttaatgagattgcagagcatgttgctacaaagaca
aaagctcagtgtatgcttcattttcttcaaatgccaatcgaggatgcgtttcttaatcaa
tttgactacaaagttccaagtacaaaagacactacagattcagctgtgtctaaagatgat
aaatctgtccaaaaagaggctcctgaagagacagagaataagaatcctgttaaagaagct
gaaactgtgaaaaaaactccagaaacagaagatgacaatgaaggaaacgttcctccagaa
tcttcgaaacctggagatgcgagtgaagaaactagtgaagtggaagccgagcagaaaacg
ctgaaggtagaaaccgacactgatgaaagatgtaaagatgatgctgatgaaaacgttgct
ttgaaagctctgactgaagcttttgaagagcttggttatcctatcacacctgaagcttct
ttatcctttgctgatttaggaaatcctgtcatgggactggcagcttttctggtgaggttg
gcgggatctgacgttgctactgcttcagcccgggcttccataaactctctgaaaagcaat
tctggattgctgcttgccacaagacattgttttgttctcgaagatccactagacaacaag
aaggattcagctgaatcaaaaagtgtggatgcagtggggaacggtgatagtgcccataaa
gatgaacagccagaagaaaaaagccagaaagcagaaggtgtctccttgaatgcaaatgac
agggaaatgacagaagctgattcaggcaaagaaaatcaggattcagtctctgaagaaaag
caacctggttccagaactaaaaaatctgctaggaaaccagatgctaaaggactaaaaaaa
tctactaattcagtggcaactgaaaaatcagaggaaccagcggatataatttgtacatcg
caggataaatgttcagggaaagagctccaagaacctttgaaggatgggaataagctttct
agtgaaaataaagacgcctctcaagcaactgtctcccagttagctccagatgcttctcag
ccagaggcatcaaaagatgtggagatgaaggatatgtcacagtcacagaaggatcctcaa
gatatggtcaaaacagtaggagaggagattgaacaggctaagaagaatgcaaaggatgtt
cttagtatgccagacacgtctgttgcacagcaggccattgcatcaccttctgtaccggaa
aatggaccagatggtgaaaatacaaagaaagagaaggatgtctctgaagagacaaaagac
aaacataacactgataagcttaagcgcgcagctatctctgctctctcagctgcagcagta
aaggcaaagcatcttgcaaagcaagaagaagatcatatccgacaactttctggatcattg
atagagaagcagttacgtaaactagaagcaaaactatcaatattcaacgacgctgaaagc
ttgacagtgagggtaaaagagcaattggagaggtcaaggcaaaggctataccacgaaaga
gcgcagatcatagcaactagactcggtgccccaccttcaatgtcctcaaaggcatcatta
ccaacaaacagaaccgctgcaaatcttgctaatgtggctcaaagacctcccatgggtatg
tcatttccacggccaccaatgccaaggcctccaggtgcatcaccattctctgttcctggc
tcacatgtagctgcaacagcaatgagcggaagctcaggtccacctcaaggttcagacaat
gtttcttcggtttag
DBGET
integrated database retrieval system