Brassica rapa (field mustard): 103834665
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Entry
103834665 CDS
T03449
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103834665
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brp03019
]
103834665
Messenger RNA biogenesis [BR:
brp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
103834665
mRNA degradation factors
5'-3' decay
Decapping complex
103834665
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
103834665
NCBI-ProteinID:
XP_009108983
UniProt:
M4E4Y5
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Position
A1
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AA seq
774 aa
AA seq
DB search
MERSDSRDLYNFARASSADQNSSVFDASQYDFFGKNLDEMSLGGLDDDEVIAPVLGHPGA
DADDEYHLFDKAEAGGFGSLSDMDDLATTFAKLNRVVTGPKHPGVIGDRGSGSFSRESSS
ATDWTHDAELTSWLDERDQEANRWSSQSQSSAQPLYRTSSYPQRPPQLQHHNSEPIILPE
PTFTSFPPPGSRSQQTSLGNLHRAPSLPGGSQFNFTPLSSSSSHLSGLPQWPQYSGNLTR
HASCGPTLGNMAQPHWFTDPGLLQQQHQQLPPRNDLLAQHMMALQQRQSYAQLAAIQSQL
CSSYPSPSSRKVPFGVGDVREQHKHKSSSHRSRKNKGISQQASSDAASQKSESGLQFRSK
YMTSEEIESILKMKHSNSHSNDPYVNDYYHQARLAKKSRATISHFYPSQLKDHQPRSRNS
SEQHQQVHVDALGKITLPYIRRPRALLEVDSSPGSADQKGSGKHLEQEPLVAARVTIEDA
LGVLIDIVDIDRHLQSTRPQEGGALVKRKRQILLEVLATALQLADPFSKTNQTAKDDVVF
LRIATLPKGRKMLTKYIQLLVPGTEIARVVCMAIFRHLRFLFGGLPSDGLAAETVVSLAK
AVTVCVQAMDLRALSACLAAVVCSSEQPPLRPIGSSAGDGASVVLISLLERAAEVVVEVP
PRVNHDGLWRASFDEFFNLLTKYCRSKYETIRSQNQGSAADVLEVAIKREMPAELLRASI
RHTSDDQRNYLLNFGRKPSAIISESASHARGGQINSESVRGLSKREREVITLNL
NT seq
2325 nt
NT seq
+upstream
nt +downstream
nt
atggagagatccgattccagggatttatacaactttgctcgcgcttcctcagcagatcag
aatagttcggtctttgacgcgtctcagtatgatttctttgggaaaaatcttgacgaaatg
tcactgggaggtttagacgacgatgaagtgatcgctcctgttcttggacatcctggtgct
gatgctgatgatgagtatcacttgtttgataaagcagaggctggaggttttggatcatta
tctgacatggatgatcttgccactacttttgcaaagctaaacagagttgttaccggacct
aaacaccctggagttattggtgacagaggttcaggatccttttcaagagagagttcttct
gctaccgattggacacacgatgcagagctcacaagctggttggacgaacgagatcaagag
gctaatagatggtcctcacagtcacaatcatctgctcaacctttgtacagaacatcctcc
tatcctcagcgtccaccgcagctacaacaccacaatagtgaaccaataattttaccggaa
ccgactttcacttcctttcctccccctggtagcagatctcaacagacttcacttggaaat
ctccatcgcgctccttctcttcctggtggttctcagttcaattttaccccactgtcaagt
tctagttctcatctttcaggattgccgcagtggcctcagtacagtggtaatttgactaga
catgcctcgtgtggccccacgcttggtaacatggcgcaacctcattggttcactgatcct
ggtcttctgcaacaacagcaccaacagttgcctcctcggaatgatcttttggcacagcac
atgatggccctccagcagagacaatcgtatgctcaacttgcggcgatacagtcccaactg
tgtagttcctatccttcaccatcatcacgtaaagtccctttcggtgttggtgatgttagg
gaacaacacaaacacaagtcatcatctcacagaagtcgaaagaacaaaggcatctcccaa
caggcatcatcggacgcagctagtcagaagagtgaaagtggattgcagtttagatcaaaa
tacatgacttctgaagaaatagagagtatactcaagatgaagcactctaattcgcacagc
aatgatccttacgtcaatgactattaccaccaagctcgccttgccaagaagtctagagca
acaatctcacacttctacccttctcaactgaaggatcaccagcctcggtctcgtaatagt
tctgaacagcatcaacaagttcatgtagatgctcttggaaagattacacttccttatatt
cgcaggccacgtgcgttgctagaagttgactcttcccctggctctgctgatcagaaaggc
tcaggaaaacatttggagcaggaacctcttgtggcagctagggttacaattgaagacgct
cttggagttcttattgacatagttgacattgacaggcatctccagtccacaaggcctcag
gaaggaggtgctcttgtcaagagaaagcggcagattctcctagaggtattagccacagca
ctccaacttgctgatccgttcagcaaaaccaatcagactgctaaggatgatgttgtcttt
ctccgtatagcgactcttccgaagggccgtaaaatgcttacaaagtacatacagcttctg
gttccaggcactgagattgctcgagttgtctgcatggctatattccgccacttgagattt
ttattcggcggcttgccttcagatggtttagcagcagagacggttgtgagtcttgccaaa
gcagtcacggtctgcgttcaagccatggacctacgagcgctgagcgcttgccttgcagct
gtagtctgttcctcagagcagccacctctgcgtcctattggaagctctgctggagatggt
gcttcagttgttttgatatctcttctcgagagagctgctgaggttgtggttgaggttcct
cctcgagtcaatcatgatggtctgtggagagcgtcatttgatgagttcttcaaccttctt
accaaatactgcaggagcaagtatgagacgatccgcagccagaaccaagggagtgcagct
gatgttttggaggtggcgataaagagggaaatgcctgctgagcttttacgagcgagcatc
cgtcacaccagtgacgaccagaggaactatttgttgaactttggccgtaaaccgtcggct
attattagtgagtcggcgtcgcatgcaaggggtgggcagatcaactctgaatctgtgagg
ggtttatcaaaaagagagagagaagtgataactctgaatctgtga
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