KEGG   Brassica rapa (field mustard): 103834702
Entry
103834702         CDS       T03449                                 
Name
(RefSeq) WD repeat-containing protein VIP3-like
  KO
K12602  WD repeat-containing protein 61
Organism
brp  Brassica rapa (field mustard)
Pathway
brp03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:brp00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    103834702
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:brp03019]
    103834702
Messenger RNA biogenesis [BR:brp03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ski complex
     103834702
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 WD40 Beta-prop_WDR3_1st WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_WDR3_2nd Beta-prop_EML_2 WD40_Gbeta Beta-prop_WDR90_POC16_2nd Beta-prop_WDR36-Utp21_2nd EIF3I WDR55 Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd ANAPC4_WD40 Beta-prop_WDR36-Utp21_1st Beta-prop_EML Beta-prop_RIG_2nd Beta-prop_WDR75_1st WD40_MABP1-WDR62_1st Beta-prop_EIPR1 Beta-prop_SCAP Beta-prop_WDR19_1st Beta-prop_Aladin WDR90_beta-prop_4th NBCH_WD40 Beta-prop_TEP1_C Beta-prop_IFT122_1st Beta-prop_Vps41 Beta-prop_DCAF12 WD40_RFWD3 Beta-prop_SPT8 eIF2A Beta-prop_WDR35_TULP_N Beta-prop_IFT140_1st Ge1_WD40 Beta-prop_WDR41 Beta-prop_VPS8 Beta-prop_RIG_1st Beta-prop_NUP159_NUP214 Beta-prop_WDR11_1st CFAP43_N Beta-prop_HPS5 Tricorn_2nd Beta-prop_ACSF4 Beta-prop_pof12 Beta-prop_LRRK2
Other DBs
NCBI-GeneID: 103834702
NCBI-ProteinID: XP_009109022
LinkDB
Position
A08:complement(14609368..14614932)
AA seq 321 aa
MKLAGLKSIENAHEDSVWAATWVPATEDRPSLLLTGSLDETVKLWRADELDLVRTNTGHS
LGVAAVAAHPSGIIAASSSLDSFVRVFDVDTNATIAVLEAPPSEVWGMQFEPMGTILAVA
GGSSASVKLWDTASWRILSTLSIPRPEAPKPSDKTSSKKFVLSVAWSPNGKRLACGSMDG
TICVFDVERSKLLHQLEGHNMPVRSLVFSPVDPRVLFSGSDDGHVNMHDAEGKTLVGSMS
GHTSWVLSVDASPDGGAIATGSSDRTVRLWDLKMRAAIQTMSNHNDQVWSVAFRPPGGTG
VRAGRLASVSDDKSASLYDYS
NT seq 966 nt   +upstreamnt  +downstreamnt
atgaaactcgcaggtctgaaatcgatcgagaacgcgcatgaagactccgtctgggcggcg
acttgggttccggcgacggaggaccgtccgtcgttgcttctgacgggatctctcgacgag
acggtgaagctatggcgagcggacgagctggatctcgtgcggaccaatacgggacactcc
ttgggagtggcagctgtggcggcgcatccttcggggataatcgcagcgtcttcttcgctc
gatagcttcgtccgtgtctttgatgttgacactaatgctactattgctgttcttgaagct
cctccttctgaggtttgggggatgcagtttgaacctatgggtactatccttgctgttgca
ggtggtagcagcgcctcagtcaagctctgggacactgcgagctggagaatactctcaact
ctatcaatcccacgtccagaagcaccaaaaccttctgacaaaaccagcagtaagaaattc
gttctctccgtagcttggtctcctaacgggaaacgccttgcttgtggttcaatggacggc
accatctgcgtctttgatgtcgaacgctccaagcttcttcaccagctagaaggtcacaac
atgcctgtgaggtcccttgtgttctcccctgtagacccgagagtcctcttctccggatca
gatgacgggcatgtgaacatgcacgacgcagaagggaaaacgctggtggggtccatgtcg
ggtcacactagctgggtgctgagcgttgatgctagcccagacggtggagctatagctaca
gggtcaagcgatagaactgtgaggctatgggatcttaagatgagagcggctattcagaca
atgagtaaccataatgatcaggtttggtctgtagcgtttagaccacctggtggaactggt
gtacgtgctggtcgtctcgctagtgtctctgatgacaagagtgcatctctctatgattac
tcatga

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