Brassica rapa (field mustard): 103834896
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Entry
103834896 CDS
T03449
Name
(RefSeq) probable pectate lyase 18
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp00040
Pentose and glucuronate interconversions
brp01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
103834896
Enzymes [BR:
brp01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
103834896
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
103834896
NCBI-ProteinID:
XP_009109237
UniProt:
M4D1Y2
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Position
A08:15605665..15607527
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AA seq
406 aa
AA seq
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MQMTKLFISIVSFLLYAHLILSSPVPDPEAIVEEVHKSINASVAGRRKLGYLSCTTGNPI
DDCWRCDPHWETNRQRLADCAIGFGKNAIGGRDGRIYVVTDSGNDDPVTPKPGTLRYAVV
QDEPLWIIFQRDMTIQLKEELIMNSFKTIDGRGASVHMAGGPCITIQYVTNIIIHGIHIH
DCKPGGNAMVRSSPRHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCEDGLIDAIIGSTAI
TLSNNYMTHHDKVMLLGHSDTYTRDKNMQITIAFNHFGEGLVQRMPRCRHGYFHVVNNDY
THWEMYAIGGSANPTINSQGNRFLAPDIRFSKEVTKHEDAPESEWKSWNWRSSGDLLLNG
AFFTPSGGATSSSYAKASSLGARPSSLVGPLTVGSGALNCRKGSRC
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgcagatgacgaagctctttatctccatagtctcctttcttctctatgctcatttgatc
ttatcttcaccagtaccagacccagaagctatcgtcgaagaagttcacaagagcattaat
gcgtcggttgctggaagaaggaagctaggttacctctcatgcaccactggtaaccccatc
gacgactgttggcgatgcgatccacactgggagaccaaccgtcaacgtctcgcagactgc
gccatagggttcggcaagaacgctataggtggccgagatggtcgtatctacgtggtgaca
gactcaggaaacgacgacccagtgacccccaaacccggaacgttaagatacgctgtggtt
caagacgagccactatggatcattttccaacgagacatgaccattcagctcaaagaagag
ctgatcatgaactctttcaagaccatagacggtcgtggcgcgtcagtacacatggctggt
gggccatgcattacgatccagtacgtgactaacatcatcatccatggtatccatatccat
gattgtaagccaggtggtaacgctatggtgcggagctcaccacggcattacggatggaga
acgatatcggacggtgacggtgtctccatctttggaggaagtcatgtttgggttgaccat
tgttcgttatctaattgcgaagacgggcttattgatgctataataggctcgacggctatt
actctgtctaacaattacatgacgcatcatgataaggtcatgttgcttggtcatagtgac
acttacactcgtgacaagaacatgcaaatcaccattgcttttaaccattttggcgaaggt
cttgttcaaagaatgccaaggtgtagacatgggtacttccatgtggtgaacaacgactat
acacattgggagatgtatgctattggtggaagtgctaaccctacaatcaatagtcaaggg
aacagatttttggccccagatattagatttagcaaagaagtgactaagcatgaggacgcc
ccagagagtgagtggaagagctggaactggagatcctctggtgatttattgctaaacggt
gcattttttacgccttcgggtggtgctacctcgtctagctatgccaaggcttcgagtctt
ggggctagaccgtcttctcttgttggaccgttgacggttggttctggtgcattgaattgc
cgtaagggttcccgttgctga
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