Brassica rapa (field mustard): 103835175
Help
Entry
103835175 CDS
T03449
Name
(RefSeq) E3 ubiquitin-protein ligase UPL3
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
103835175
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
brp04121
]
103835175
Enzymes [BR:
brp01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
103835175
Ubiquitin system [BR:
brp04121
]
Ubiquitin ligases (E3)
HECT type E3
103835175
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
ARM_ARMC5
HEAT_EZ
K_channel_TID
UNC45-central
Motif
Other DBs
NCBI-GeneID:
103835175
NCBI-ProteinID:
XP_009109541
UniProt:
M4D2N4
LinkDB
All DBs
Position
A08:17052624..17061081
Genome browser
AA seq
1888 aa
AA seq
DB search
METRSRKRAEATSTAPSSSSSSPPPPPSSGPTTRSKRARLSSPSSSSAAATAPSSSTRSR
SSRSTTATVAVTPMDTSTESSGFHRGGGRGNRGNDNTNSDKGKEKEHEVRIRDRERDRAR
QQLNMDAAAAAAAAADEDDDNDSEDGNGGFMHPNMSSASSALQGLLRKLGAGLDDLLPSS
GIGSGSSSHLNGRMKKVLAGLRSEGEEGKQVEALTQLCEMLSIGTEDSLSTFSVDSFVPV
LVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVSCFVARLLTIEYMDLAEQS
LQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVAVSTAANMCKKLPSDASDYVME
AVPVLTNLLQYHDAKVLEYASICLTRIAEAFASSPDKLDELCNHGLVTQAATLISASNSG
GGQASLGVSTYTGLIRLLSTCASGSPLGCRTLLLLGISSILKDILSGSGVSANASISPAL
SRPADQIFEIVNLANELLPPLPEGSISLPTSANALVKGSGQKKSSPSTSGKQEDSPKVSP
REKLLSDQPELLQQFGLDLLPVLVQIYGSSVNGTIRHKCLSVIAKLMYFSTPEMIQSLIG
DTNISSFLASVLAWKDPQVLVPALQVAEILMEKLPETFSKVFVREGVVHAVDQLVLVGKP
SSHASTDQENDCVPGSARSRRYRRRSSNANSDGNQSEELKNSVSASIGANHNSMESPTAS
FMLRETVSSCAKAFKDKHFPSDGGEFDVGVTDDLLHLKNLCTKLTAGTNDHKVKGKGKSK
ASGPCLGDFSASKEEYLIGIISEILGELSKGDGVSTFEFIGSGVVAALLNYFSYGYFSKE
KISEVDLPKLRQDGLRRFTAFLEIALPSDGNEGKIPPMTVLIQKLQDALSSLERFPVVLS
HPSKSLSGSARLSSGLSALAHPLKLRLCRAPGEKALRDYSSNIVLIDPLASIAAVEEFLW
PRVQRSESGVKPAAPVGNTEPGTLPSGAGVSSPSSSTPASTTRHSSRSRSAIKIGDASKK
EPVHEKGTSSSKGKGVMKPAQPDKGPQTRSSAQRKAVLDKDTLMKPASGDSSSEDEEMDI
SPVDMDDALVIEEEDISDDDEDDDDEDVLDDNLPMCTPDKVHDVKLGDAVDDEGAGLAPS
GRQMNSALAGSSGTATARGSNSTDAGIGNLYGSRGALSFAAAAMAGLGAASGRGIRGSRD
LHGRTLNRSSDESSKLMFTAGGKQLSRHMTIYQAVQRQLMLDEDDDDRLGGSDFISSDGS
RLNDIYTIMYQMPDSQANRLSAGGASSTTPSKSTKSATTNASVEAQSYRASLLDSIVQGK
LPCDLEKSNSTYNVLALLRVLEGLNQLGPRLRAQTVSDRFAEGKITSLDDLNTTAAKVSH
EEFINSKLTPKLARQIQDALALCSGSLPSWCYQLTTACPFLFPFQTRRQYFYSTAFGLSR
ALNRLQQQQGADGSGSTNEREMRIGRLQRQKVRVSRNRILDSAAKVMEMYSSQKAVLEVE
YFGEVGTGLGPTLEFYTLLSHDLQKVSLGMWRSNSGDKLSMQTDRDEIQDGKSAAARDRD
IVQAPLGLFPRPWPSTADVSEGSRFHKVVEYFRLLGRVMAKALQDGRLMDVPLSTAFYKL
ILGQELDLHDVILFDAELGKTLQELRVLVGRKHYLEAGGGDNSSGISDLCLRGSRIEDLC
LDFTLPGYPEYILRPGDDIVDINSLEDYISLVVDATVKRGVARQIEAFRSGFNQVFDIKS
LQIFTPSELDYLLCGRRELWEAETLVEHIKFDHGYTAKSPAIIFLLEIMGELTADQQRAF
CQFVTGAPRLPPGGLAVLNPRLTIVRKLSSTSNAAANGTGASETADDDLPSVMTCANYLK
LPPYSTKEIMYKKLLYAINEGQGSFDLS
NT seq
5667 nt
NT seq
+upstream
nt +downstream
nt
atggaaactcggagccgcaagcgtgcggaggcgacctcaactgccccatcttcttcttct
tcctctcctcctcctcctccttcctcaggtcccaccactcgcagcaaacgcgctcgcctc
tcgtctccctcttcatcttcagccgccgctactgcaccttcctcctccacccgctctcgt
tcttctcgctctaccaccgctacagtcgccgttactcccatggacacatccaccgagtct
tctggattccaccgcggcggaggacgaggtaacaggggaaacgataatactaactctgat
aagggaaaagagaaggagcatgaggttaggattagggatagagaaagagacagagctagg
caacagctcaacatggacgctgcagctgctgctgccgccgccgctgacgaggacgacgac
aatgatagtgaggatggcaacgggggattcatgcatcccaacatgagctcagccagcagt
gcgttacaagggttgctgaggaagcttggagctggacttgatgacttgcttccttcttca
ggtattggctcaggttcgtcttctcacttgaatgggaggatgaagaaggtactcgctggc
ttgcgctctgaaggagaagagggaaagcaggtcgaggctttgacgcagctgtgcgagatg
ttatctattgggaccgaagactccctgagcaccttctctgttgattccttcgtcccggtt
cttgttggtctacttaaccatgagagcaatccggatattatgcttcttgctgccagggct
cttactcatctgtgtgatgttttgccgtcttcttgtgctgctgttgttcattacggggct
gtttcgtgctttgtcgccagattgttgacaatagaatacatggacttggccgagcagtct
ctgcaagctctcaaaaagatatctcaggaacacccaacggcctgtttgcgtgctggtgct
cttatggcagtgctatcatatctggatttcttctccaccggtgtccagcgtgtagcagta
tctaccgctgcaaatatgtgcaagaagttaccttctgatgcatctgattatgttatggaa
gctgtaccggtactgacaaacctacttcagtatcatgatgcgaaggttttggaatatgct
tctatctgtttgactcggattgccgaagcatttgcatcgtcccctgataaattagatgaa
ttatgcaaccatggcctggtgactcaagctgcgactcttatatccgctagcaactcggga
ggtgggcaagcatctctcggtgtttcaacatacacgggattaatccgattactttccacc
tgtgcgagcggttcacctcttgggtgcaggacattacttcttctcggtattagtagcatt
cttaaggatattctgtcgggttccggtgtctctgctaatgcatctatatccccagcactg
agcaggcctgcagatcagatttttgagatagtcaacctagcgaacgagctcctccctcca
ctgccagaaggaagtatctcccttcctactagcgcaaacgcgttagtgaaaggttcaggc
caaaaaaagtcttctccaagtacttcaggaaaacaagaagattctcccaaagtttcacct
agagaaaaattacttagtgatcaacccgaacttctgcagcaatttggattggatcttctt
ccagttttagtgcagatctatggttctagtgtcaatggtactattcgtcataaatgtctc
tcagttatcgcaaagttgatgtatttcagcactccagaaatgattcaatctctaattggt
gacacaaatatatcgagcttcttggctagtgtcttggcatggaaagatccacaagtcttg
gttcctgctctacaagttgcagaaattctgatggaaaaacttcctgaaactttctcgaaa
gtgtttgtgagggaaggggtggttcatgctgtagatcaacttgtcttggttggtaaacct
agttctcatgcttctactgatcaggaaaatgactgtgtgcctggatctgcacgatctagg
cgttatagacggcgaagtagtaacgccaattctgatggaaatcagtcggaagagcttaag
aattctgtgtcagctagtataggtgcaaaccataattccatggaatctcctacagcgagc
ttcatgctaagggaaacagttagctcctgtgcaaaagcattcaaagacaagcacttcccg
tctgatggtggggaatttgatgttggagttacagatgatctcttgcatctgaagaatctt
tgcacgaagctaactgctggtacaaatgatcataaagtgaaaggaaaggggaaatctaaa
gcctctgggccatgcctcggcgatttttctgctagcaaagaagaatacttgattggtatc
atctccgagatacttggcgagctaagcaaaggagatggtgtctcaacttttgagtttatt
ggcagtggtgtggtagcagcattgcttaactatttttcttatggatacttttccaaagag
aagatctccgaggttgatttgcccaaacttcgccaggatgggctcagaaggttcacagct
tttctagaaattgcacttccttctgatggtaatgagggaaagatccctcctatgactgtt
ttgattcagaaacttcaagatgctttgtcttcactggaacgctttccggtcgtccttagc
catccctcaaagtcactcagtggaagtgctcgtctctcatctggattgagtgctttggca
catcctttgaagttgcggttatgccgtgcacctggagagaaggcactacgtgattactcc
tccaatattgttctcatagatcctttggcaagcatagcagcagtggaggaatttctctgg
ccccgagttcaacgcagtgaatctggggtgaagccagcagcgcctgttggaaacactgag
ccaggcacattacctagcggtgctggtgtttcatcaccatcctcgtcaactccagcttcc
accactcgtcattcttctagatctagatctgcaattaaaataggcgatgcctcaaagaaa
gaacctgtgcacgagaaaggtaccagctcatctaaaggtaaaggtgttatgaagccggct
cagccggataaggggcctcagacaaggagcagtgctcaaaggaaagctgttcttgacaaa
gatacactaatgaaaccagctagcggagactccagctctgaggacgaagaaatggatata
tcccccgtcgacatggatgatgctttggttattgaagaggaagacatttctgacgacgat
gaggatgatgatgatgaggatgtcttggatgacaatcttcccatgtgcacccctgataag
gttcatgatgtaaaattgggagacgcagtggatgatgagggagccggtctagcacctagc
ggccgacagatgaattcagctttggcaggaagtagtggaacagcaactgcaaggggatct
aattctactgatgctggcattgggaatctttatggttctaggggtgcactctccttcgct
gctgcggcgatggcagggcttggagctgccagtggtagaggtatcaggggaagtagagac
ctacatgggcgtaccctgaatcgaagttctgatgagtcctctaagttgatgtttactgcg
ggaggaaagcaacttagtaggcatatgacgatatatcaggctgtgcaacgacaacttatg
ctagacgaagatgatgatgacaggctcggtggcagcgatttcatctccagtgatggaagc
agattaaatgatatatatactatcatgtaccagatgccggacagccaagcgaataggttg
tctgctggtggtgcaagttctaccacaccatctaaatccaccaaatctgctactactaat
gcaagcgtagaagctcagtcgtatagggcatctcttttggatagtatcgtacaaggaaag
cttccatgcgaccttgagaagtccaattctacgtataatgttctggcgttgttacgtgta
ttagagggtttaaatcagcttggccctcgcttaagagcccaaaccgtttctgatcgtttt
gcagagggtaaaattacaagtctggatgatctgaatacaactgctgcaaaggtttctcat
gaagaattcatcaacagcaaacttacacccaaattagctcgacagatccaggacgcgctt
gctttgtgcagtggaagtcttccctcttggtgctaccagttgactacagcatgcccgttt
ttgtttccgtttcagacccggagacagtatttctattcaactgcctttgggttgtcgcgt
gcattgaaccgcttgcagcagcagcaaggtgctgacggcagtggttctacaaatgaacga
gagatgagaatagggagattgcagcgccagaaagtgcgtgtatcccgaaatagaatatta
gattctgctgcgaaagttatggagatgtattctagccaaaaagctgtgcttgaagtagaa
tattttggtgaagttggtactggtctaggcccgacacttgagttttacacactcctaagc
catgatttgcaaaaggtttcccttgggatgtggagatcaaattctggtgacaagttatct
atgcaaactgatagagatgagattcaagacggtaaatcagcagcagctagggacagagat
atagttcaggcaccacttgggttgttccctcggccctggccctcaactgctgacgtatct
gaaggtagtcggtttcataaagttgttgaatatttccgccttttagggcgcgtgatggca
aaggcacttcaagatggacggctaatggacgtcccgttaagtacagctttttataagctc
attcttggtcaagagcttgatttgcatgatgttatattatttgatgctgaacttggcaag
actttgcaagagcttcgtgttcttgttggccgtaagcactatctggaagcaggcggtggt
gacaacagtagcgggatttctgatttatgtttgcgtggatcccgtattgaagatctttgc
ttggacttcaccctacctggctaccctgaatacatattgagaccaggagatgacattgtt
gatattaatagtcttgaggactatatatccctggtcgttgatgccactgtcaagagagga
gttgcccggcagattgaagccttcagatctggattcaatcaggtctttgacataaaatct
ctacaaatattcaccccttctgagctggactacttgttgtgtggtcgtagagagttgtgg
gaggcggagactcttgttgaacatatcaagtttgatcacggttatactgcaaaaagtccg
gcaatcattttcttattggagatcatgggagagctaacagcagatcaacagcgggctttc
tgccagttcgtaactggagctcctaggcttcctcctggtggcttagctgttctcaaccca
aggctgacgattgtgagaaagctctcatcaacctcaaatgctgctgccaatgggacaggg
gcttcggaaacagcagacgacgatcttcccagcgtcatgacttgcgccaactaccttaag
ctccctccttattctacaaaggaaatcatgtacaagaaactgctctacgccatcaacgaa
gggcaggggtcgttcgacctatcctag
DBGET
integrated database retrieval system
