Brassica rapa (field mustard): 103835942
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Entry
103835942 CDS
T03449
Name
(RefSeq) cleavage stimulation factor subunit 77
KO
K14408
cleavage stimulation factor subunit 3
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
103835942
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brp03019
]
103835942
Messenger RNA biogenesis [BR:
brp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
103835942
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_14
TPR_19
HAT_Syf1_CNRKL1_C
TPR_15
Iml2-TPR_39
HAT_Syf1_M
TPR_8
TPR_2
TPR_CcmH_CycH
ANAPC16
A-2_8-polyST
TPR_16
TPR_12
Motif
Other DBs
NCBI-GeneID:
103835942
NCBI-ProteinID:
XP_009110388
LinkDB
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Position
A08:20129237..20135823
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AA seq
736 aa
AA seq
DB search
MADKYNVEEAEALAKRALHLPITQATPIYEQLLSLYPTSARFWKQYVETQMAVNNDDATK
QIFSRCLLTCLQVPLWQCYIRFIRKVYDKKGAEGQEETTKAFEFTLNYIGTDIASGPIWT
EYITFLKSLPALNPHEDMQRKIALRKVYQRAILTPTHHVEQLWKEYENFENSVNRQLAKG
LVNEYQPKFNSARAVYRERKKYIEDIDWNMLAVPPTGSSKEEVQWVAWKKFLTFEKGNPQ
RIDAALSTKRIIYVYEQCLMCLYHYPDVWYDYAEWHIKSGSTDAAIKVFQRALKAIPDSE
MLKYAYAELEEARGAIQSAKNLYESILGVSTNSLAQIQFLRFLRRAEGVESARKYFLEAR
KSPSCTYHVYIAFATMAFCLDKDPKAAHNIFEEGLKRYMTEPVYILEYADFLTRLNDDRN
IRALFERALSTLPTEESAEVWNRFVQFEQTYGDLASILKVEQRRKEALFGKGEEGSPALE
SSLQDVVSRYSYMDLWPCTSNELDHLSRQELLVKNMNKKVEKTNQPPGSATIGSVASSSK
VVYPDTAQMVVHDPAKKSGIEFSSSAKPVAASASNTFQSNVTATATHGSASTFDEIPKTT
PPALLAFLANLPHVDGPTPNVDVVLSICLQSDLPTGQTAKQNFVAKGNVPSQNDPSGPNR
GGSQRLPRDRRATKRKGSDRQEDDDTASIQSQPLPTDVFRLRQMRKARGISTSSQTPTGS
ASYGSAYSGELSGSTG
NT seq
2211 nt
NT seq
+upstream
nt +downstream
nt
atggctgataagtacaacgtcgaggaagcagaggctttagccaagagagccttgcactta
ccaattacacaggcgacgccgatctacgagcagcttttgtcactctatcctacttctgcg
aggttttggaagcagtatgtggagacacaaatggctgtgaataatgatgacgctaccaaa
cagatatttagtcgttgcttgttgacctgtcttcaagttcccctttggcaatgttacatt
cggttcatcagaaaggtttatgataagaagggagctgagggtcaagaggagaccacaaag
gctttcgagtttacacttaattatattgggacagacatagcatctgggcctatatggact
gagtacattacctttctgaaatctcttccggctcttaacccccacgaagatatgcaacgg
aagattgctctccggaaagtttatcagagagctatattaactcctactcaccacgttgag
caactttggaaagaatatgagaactttgagaactctgttaaccgtcaattggccaaagga
ctcgtcaatgagtatcaaccaaagtttaacagtgccagagctgtctatagggagcgcaag
aagtacattgaagacattgattggaacatgcttgctgtaccaccaacaggatcgtccaag
gaagaagttcaatgggtggcctggaagaagtttttaacctttgagaagggaaaccctcaa
aggattgacgcggccttgtcaactaagcggattatatatgtctatgaacagtgtctaatg
tgtttataccactatcccgatgtgtggtatgactatgctgagtggcacataaaatctggt
tccacagatgcggcaatcaaagtatttcagcgagctcttaaagccattcctgattcggaa
atgttgaaatatgcttatgctgagttggaggaagctcgtggagctattcagtcagcaaag
aatttatatgaaagcattttgggggttagcacaaactctttggcacaaatacaattcctt
cgttttctcaggagggcagagggtgttgaatctgctcgcaagtactttctagaagctaga
aaatctcctagctgtacatatcatgtgtatattgctttcgctacaatggccttttgtctt
gacaaggatccaaaggctgctcataatatcttcgaggagggattgaaacgctatatgact
gaacccgtttacatccttgagtatgcagatttcttgactagactgaatgatgatagaaat
atcagagctctatttgaacgggccttaagcacactacccactgaagaatctgctgaggtc
tggaatagattcgttcagtttgaacaaacatatggagatcttgctagtattctaaaggtt
gagcagagaaggaaagaagcacttttcggaaaaggggaagagggatctcctgctctagag
agttcacttcaagatgttgtttcgcggtacagttacatggatctttggccatgcacttcg
aatgagcttgatcatttatccagacaagagttgcttgtgaaaaatatgaataagaaagta
gagaagacaaaccaacctcctggatctgcaactataggtagtgtagcttcttcgtcaaaa
gttgtttatccagatacagctcagatggtcgtccatgacccagcaaagaaatcaggaatt
gagttttctagttctgcaaaaccagtggctgcttctgcttctaacacctttcaaagtaat
gtgacagcaactgcaactcatggatcagccagcacatttgatgaaataccaaagactact
ccacctgcattgttagcttttttagctaacctgcctcatgttgacggcccaacacccaat
gtggatgttgttctctcaatatgtctgcagagtgacttaccaacaggccaaactgccaag
cagaattttgttgccaaaggcaacgttccaagtcaaaatgatccctcaggtccaaaccgg
ggtggatctcagagattgccaagagacagaagagctacaaagagaaaaggttcagatagg
caagaagacgatgatactgcctccatacaaagccagcctctacctacagatgtattcaga
cttaggcaaatgcgtaaggctcgggggatctcaacatcgtcacagacaccaaccggttcc
gcatcgtatggtagtgcctactccggtgagctatctggtagcaccggctaa
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