Brassica rapa (field mustard): 103835996
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Entry
103835996 CDS
T03449
Name
(RefSeq) serine/arginine-rich splicing factor SR45
KO
K14325
RNA-binding protein with serine-rich domain 1
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03013
Nucleocytoplasmic transport
brp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
103835996
03015 mRNA surveillance pathway
103835996
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brp03019
]
103835996
Messenger RNA biogenesis [BR:
brp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
103835996
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_ACIN1
Nup35_RRM_2
RRM_3
Motif
Other DBs
NCBI-GeneID:
103835996
NCBI-ProteinID:
XP_009110449
LinkDB
All DBs
Position
A08:20334209..20337547
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AA seq
365 aa
AA seq
DB search
MAKPSRGRRSPSVSGSSSRSSSSSRSRSSGSRSLSRSRSLSSSSRSVSSGSRSPPPRGKR
KAAPIQESLVLHVDSLSRNVNEGHLKEIFGNYGEVVHVELAMDRAVNLPKGYAYVEFKAR
ADAEKALLFMDGGQIDGNVVKAKFTLPSRQKLSPPPKPVSTAPKREAPKPDNAAAGIEKD
RPMRSRETSPRRRSPLPRRLPDSPPRRRPSPPIRRRGDTPPRRRAASPPRGRSPSSPPPR
RQRSPLRGSPRRIRGSPVRRRSPPPLRRRSPPRRLRSPLRRSPIRRRSRSPIRRPGRSRS
RSISPRRGRGPAGRRGRSSSSYSSSPSPRRIPRKISRSRSPKRPLRGKRSSSNSSSSSSP
PPRRT
NT seq
1098 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaacctagccgtggccgtcgttcaccttccgtctctgggtcttcatctcggtcc
agctccagctccagatctcgttcgagtgggtccaggtctctttcccgttctagatcgctc
tcttcttcttcgcggagcgtgagctcagggagtcgtagtcctccacctcgtggaaaaagg
aaagccgcaccgattcaagaatctcttgttctccatgttgattctcttagcaggaatgtg
aatgaaggccatctcaaagaaatatttggcaattatggtgaagttgtacacgtagaactt
gcgatggatcgagctgttaatcttccaaaaggatatgcttatgttgagtttaaggcaaga
gctgatgctgagaaagccctgctgtttatggatggcggccaaattgatggaaatgttgtt
aaagcaaagttcacactaccatcgcgtcagaaactatctccaccccctaaacctgtctca
actgcaccaaagagagaggctccaaaacctgataatgccgctgctggcattgagaaagat
cggcccatgcgctcaagagagacttctccaagaaggcgatcaccactacctaggaggtta
cctgattctccccctcgccggaggccgagccctcctatccgccgtcgtggtgatacaccg
cccagacgcagggcagcatcgccacctagaggccgttctccatcttctccacctccaaga
agacagagatctcctctaaggggctcccctagaagaatccgcggcagtcctgttcgaaga
cgttctcctcctcctctaaggcgaaggtcacctccaaggagactacgcagtcctctcaga
agatctccaatccgcaggcgtagccgatccccaattcgtaggcctggtcgctctcgttca
aggtccatctcaccccgcaggggacgaggtccagctgggagacgtgggaggtcatcttct
tcttactccagttcgccaagtcccagaagaattcctaggaagatttcgaggagccgcagt
cctaagaggccactgagaggaaaaagaagcagcagtaacagcagtagcagcagctcaccg
cctcctcgcagaacataa
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