Brassica rapa (field mustard): 103836417
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Entry
103836417 CDS
T03449
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103836417
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brp03019
]
103836417
Messenger RNA biogenesis [BR:
brp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
103836417
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
103836417
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
103836417
NCBI-ProteinID:
XP_009110919
LinkDB
All DBs
Position
A08:21981250..21987817
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AA seq
529 aa
AA seq
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MYGLQLHSTMFTVKCFLIHLLTFFSSFVSGQSTICKMSSCSNSTSSLTGSTSSVPDGSGR
TFTPFFPQFGSMSPVLNPDGTLQGVYDVKDHIFFPTSNVSRAGPRNSVFGAPILVNATSS
RAPPPPSSMGNTAGGVSMSRALVFDGGSILSSTGSMAGGGLMSRALISDGGSIMSSIGSM
DGSTKHNRSMMIGLHGSPQVYSMPGSSYPSAAGEHSQTHVQAMNSLSSMSLMNSNYMTTD
YQMDLHQQELMMQSQQSSMRRHGGFYFGDASMPTYPLQLPSAQAVSRSGVFFSQTGGPPT
IGSRSVNAATGYDDQPLRHHQNTSQFGGEKLPAIGQPIRDVGSQPTQAATQSTPDPFSML
GLVNVINQTNPDVTTLALGVDLQEIGLDMTSKEKLFKTFASPWANEPLKEDHEHFDLPQC
YNGVQVPPPNQGMFRRFDMNTLFYIFYSMPNDEAQLYAANELNNRYWFYHKEHKCWFKRT
GIPLVQTNAYERGTYDCFDPDKFETVQKENFVIYYEMLERRPSLPQHRV
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
atgtatgggcttcagctgcactcaaccatgtttacagttaagtgtttcttgatccatctg
cttacgttcttttcttccttcgtttcaggtcaatcaaccatttgcaaaatgtcatcttgt
tctaactcgacgtcatcactcaccggttctacttcgagtgtaccagacggttcagggaga
acgttcactcctttctttcctcagtttgggtcgatgtctcctgttttaaaccctgatgga
actctccagggcgtttatgatgttaaagaccacattttttttcccacctcgaatgtttcc
cgcgctggaccgagaaactcagtttttggagctccaattttggtaaatgccaccagctct
cgagcaccaccaccaccgagctctatggggaatacggctggtggagtctcaatgagcaga
gctttggtctttgatggaggaagtatactgagctctacggggagtatggctggtggaggc
ttaatgagcagggctttgatctctgatggaggaagtataatgagctctatagggagtatg
gatggaagtactaaacataatagatcaatgatgattgggctccacggatccccacaggtt
tattctatgcctggaagctcttatccttctgctgctggagaacattcccaaactcatgtt
caagcaatgaacagcctaagctctatgagcttaatgaactccaactacatgacaactgat
tatcaaatggatttgcatcagcaagaactaatgatgcaatctcaacagtcatctatgagg
aggcatggtggattttactttggtgatgcgtctatgccaacatatcctctacaactacca
agtgctcaagctgtgagccgtagtggtgttttcttctctcagactggtggacctccgact
attggatcaagatctgtgaatgctgcaacgggttatgacgaccagcccctccggcaccat
cagaacacgtcccagtttggcggggagaagctaccagctattggccaacccatcagagac
gtgggatcacaaccaacgcaagcggcgacgcagtccactcctgacccttttagcatgcta
ggtttggttaatgtgattaaccagaccaaccctgacgtgactactttggcacttggggtt
gacttgcaggaaattgggttagatatgacctcaaaagaaaaacttttcaagactttcgcc
tcgccttgggctaatgaaccccttaaagaggatcatgaacacttcgatctaccgcagtgt
tacaacggagtacaagtaccacctccaaatcaagggatgtttagaaggtttgacatgaac
acattgttttacatattttatagcatgccgaatgatgaggcgcagctatacgcagctaat
gaacttaacaacaggtactggttctaccacaaagaacacaagtgttggttcaaacgaact
gggatacctctcgtgcaaacaaatgcttatgaaagaggaacatatgactgttttgatcca
gacaaatttgagaccgttcaaaaggaaaattttgttatttattatgagatgctggaaagg
aggccgtctctacctcaacaccgagtgtaa
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