Brassica rapa (field mustard): 103836545
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Entry
103836545 CDS
T03449
Name
(RefSeq) transcription initiation factor TFIID subunit 6
KO
K03131
transcription initiation factor TFIID subunit 6
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
103836545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
brp03021
]
103836545
03036 Chromosome and associated proteins [BR:
brp03036
]
103836545
Transcription machinery [BR:
brp03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
103836545
Coactivators
SAGA/TFTC/STAGA complex
103836545
Chromosome and associated proteins [BR:
brp03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
103836545
STAGA complex
103836545
TFTC complex
103836545
SAGA complex
103836545
SLIK complex
103836545
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF6_C
TAF
Histone
TFIID-31kDa
CBFD_NFYB_HMF
MMS19_C
Motif
Other DBs
NCBI-GeneID:
103836545
NCBI-ProteinID:
XP_009111070
UniProt:
M4EP78
LinkDB
All DBs
Position
A08:22410150..22414507
Genome browser
AA seq
544 aa
AA seq
DB search
MGIVPKETIEVTAQSIGITNLSPEAALMLAPDVEYRVREIMQEAIKCMRHSKRTTLTASD
VDGALNLRSLEPSYGFASGGPFRFRKAIGHQDLFYTDDREVDFKDVIESPLPKAPLDAGV
VCHWLAIEGVQPAIPENATLEVIRAPADNKIYEHKDGPLIDVRLPVKHVLSRELQLYFQK
IAELTVSKSSPALFKKALVSLASDSGLHPLVPYFTNFIADEVSRGLNDFLLLFNLMHVVR
SLLQNPHIHIEPYLHQLMPSIVTCLVSRKLGNRFADNHWELRDFTANLVSLICKRFGNTC
ITLQSRLTKTLVNAFLDPKKALTQHYGAIQGLSALGHTVVRLLILSNLEPYLSLLEPELD
AEKQKNQMKSYEAWRVYGALLRAAGLCIHDRLKVFPNLPSPSPSFLHKGKGKIINAEPRK
RKLSADSSENQPPHKRLITTDGPDVLRPQDRTGPAPMHVDKPIGNYNLPQNSAQPSSSEQ
ASDGESRNGKEKERGKSRAISMKAILGQIWKDDLDSGRLLVKLQQLYGDRILPFIPSTEM
SVFL
NT seq
1635 nt
NT seq
+upstream
nt +downstream
nt
atgggcattgtacctaaggaaacgattgaggttacagcacagagtattgggattaccaat
ttgtcacctgaggctgcactcatgcttgctcctgatgttgagtatcgtgttcgtgagatc
atgcaggaagctatcaagtgcatgcgtcactcaaagagaacgactttaacagcttcggat
gttgatggtgctctcaacttaaggagccttgagccgtcatatggctttgcctcaggagga
ccatttcgttttagaaaagctattgggcatcaggatttgttctacactgatgacagagag
gtggatttcaaagatgtgattgagtccccactaccgaaagctccccttgatgctggagtt
gtctgtcactggctggctattgaaggagtgcagccagctatcccagaaaatgctacttta
gaagtcatcagagcacctgcagataacaaaatatatgaacacaaggatggacctcttata
gacgttaggctaccagtgaagcatgtactatctagagaacttcagttatacttccaaaag
attgctgaacttacagtgagcaagtcaagtcctgctctgtttaaaaaagcattagtgagc
ttggcttcagactcaggacttcatcctctggttccatattttacaaatttcattgctgat
gaggtatcacgtggtttaaatgacttcctactcctgtttaatctaatgcacgttgttaga
agtcttctacagaatcctcatatacacatagaaccttatctgcaccagttgatgccatct
attgtaacatgccttgtatcgagaaagcttggcaatagatttgccgataaccactgggag
cttcgagattttacagcgaatctagtttcactgatatgtaaaaggtttggaaacacttgc
attacccttcagtctcgtcttacgaaaactttagtcaatgcatttttggacccaaagaaa
gctttgacgcagcactatggggcaattcaaggattatcagctttggggcacactgttgta
cgccttcttattctgtcaaatctcgaaccgtatctaagtcttctcgaaccagaactggat
gctgagaagcaaaagaaccaaatgaagagctatgaagcctggcgtgtgtatggggccttg
ctgcgtgctgcaggcctgtgcatacatgataggctaaaagtcttcccaaatttaccatcc
ccttcaccaagtttcctccataagggaaagggaaaaataatcaatgctgagccacgtaag
cggaagctgagtgctgattcttcagaaaaccagccaccccataaaagattgataactaca
gatggtccagatgtgttacgaccacaagatcgcaccggtccagctccaatgcatgtagat
aaaccgataggaaattacaatctgccacaaaactctgctcaaccatcctcatcagaacaa
gcttctgatggtgaaagcagaaacggaaaggagaaagaaagaggcaagagccgggctatt
tccatgaaagcaatccttggtcagatatggaaagacgatcttgattctggacggctcttg
gtgaaactgcaacagctctatggtgataggattcttccttttatcccttctacagagatg
tcagtattcctctaa
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