Brassica rapa (field mustard): 103836661
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Entry
103836661 CDS
T03449
Name
(RefSeq) protein LHY isoform X2
KO
K12133
MYB-related transcription factor LHY
Organism
brp
Brassica rapa (field mustard)
Pathway
brp04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
103836661
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
brp03000
]
103836661
Transcription factors [BR:
brp03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters Myb, Myb-factors
103836661
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GFIT
Motif
Pfam:
Myb_DNA-binding
Myb_DNA-bind_7
Myb_DNA-bind_6
Motif
Other DBs
NCBI-GeneID:
103836661
NCBI-ProteinID:
XP_009111205
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Position
A08:complement(22871754..22875504)
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AA seq
581 aa
AA seq
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MDTNTSDGPGEELLTKARKPYTITKQRERWTEDEHDRFLEALRLYGRAWQRIQEHIGTKT
AVQIRSHAQKFFTKLEKEAEAKGIKALDIEIPPPRPKRKPNAPYPRKPGPSSSQAKQLVS
SSECNQQAFLDLEKKISTGKENQEENCSGVNKYPLPNKVVTPGKRKTFMESSDPSLRKAS
ADNETSKASNVDNNVVHEKNKDRDDDDDDDDDGGLHSARHHPATTTSPSAATTTTSHQAF
PAFPFQHDYRSFLHMSSTFSNLIMSTLLQNPAAHAAATFAASAWPFTTNAGDSSTQMSSS
PPTIAAIVAATVAAATAWWASHGLLPTPVPLPAVPVPTPAAMDNVGNDHLEKQSTAFQEQ
NMASKSPDSSSDDSDETGITKIKADGDKEEVVAALQDSNVSHKKNPVDRSSCGSNTPSGS
DVETDALEKEKEADANQPSVIELGNRRSKIRDNNNNQTTDSWKEVSQGGRIAFQALFARE
RLPQSFSPPQVEENVNGKQISDTSMPLAHNNLNKIQDSCNADQESAVDEEPGKSLKMRET
GFKPYKRCSMEAKESQVGNANNHNDEKVCCKRLRLEAEAST
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atggatacaaatacatctgatggacctggtgaagaattgttaactaaggcaagaaagcca
tatacaataacgaagcagcgagaacgatggactgaggacgagcatgataggtttcttgaa
gccttgaggctttatggacgagcttggcaacgtatccaagaacatattgggacaaagact
gctgttcagatcagaagccatgcacaaaagttcttcacaaagttggagaaagaggctgaa
gctaaaggcattaaagctctggacatagagattccacctcctcgtcctaaaagaaaaccc
aatgctccttatcctcggaaacctggtccatcttcgtcgcaagcgaaacagcttgtatct
tcttcagaatgtaaccagcaggccttcttggatttggaaaagaaaatatcaactgggaaa
gaaaatcaagaagagaactgctcaggggtgaacaagtatcccttaccaaataaagtagta
actccagggaaacgaaagacattcatggaatcttctgatccgtcgctaagaaaggcaagt
gccgataatgaaacaagcaaggcttcaaatgtggacaacaacgtggttcatgagaagaac
aaagacagagatgatgatgatgatgatgatgatgatggtggtctgcacagcgcaaggcat
catccagctactacaacttcaccatctgctgctactactacaacttcccatcaagcgttt
ccagcattccctttccagcatgattaccgctcgtttctccacatgtcttctactttctcc
aatcttatcatgtctacactcctacagaatcctgctgctcatgctgcagccacattcgct
gcttcggcctggccctttactactaatgccggagactcatcaacgcaaatgagctcttct
cctccaactatagctgccatcgttgctgctacagtagctgccgcaactgcttggtgggct
tctcatggacttcttcctactccagtcccattaccagccgtcccagttccaactccagca
gctatggacaacgtcggaaatgatcaccttgagaaacaaagcacggcctttcaagaacaa
aacatggcttcaaaatctccagattcatcatccgacgattcagacgagactggaattacc
aagataaaggctgacggtgacaaggaggaagttgttgctgctttgcaagattcaaacgtt
tcccacaagaaaaatccagtggaccgctcatcgtgtgggtcaaacacaccttcaggcagt
gacgtggaaacagacgcattggagaaagaaaaagaggcagatgcaaaccagccaagtgtt
attgagttaggcaaccgtcggagtaaaatcagagacaacaacaacaaccaaactactgat
tcatggaaggaagtctctcaagggggtcgtatagcatttcaggctctctttgcaagagag
aggttgccacaaagcttttcacctcctcaagtggaagagaatgtgaatggaaaacaaatt
agcgacacgtcaatgccattggctcataataacttgaacaagattcaagattcttgtaat
gcagaccaagaaagcgcagtggatgaagaaccggggaagagtcttaaaatgagagagacg
gggtttaagccatacaagagatgttccatggaagcgaaagagagccaagttggaaacgca
aacaatcacaatgatgaaaaggtctgctgcaagaggcttcgtctggaagcagaagcttca
acataa
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