Brassica rapa (field mustard): 103836844
Help
Entry
103836844 CDS
T03449
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
brp
Brassica rapa (field mustard)
Pathway
brp04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
103836844
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
brp04131
]
103836844
Membrane trafficking [BR:
brp04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
103836844
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps8
Clathrin
WD40
ANAPC4_WD40
zf-RING_2
Motif
Other DBs
NCBI-GeneID:
103836844
NCBI-ProteinID:
XP_009111385
LinkDB
All DBs
Position
A09:591138..599704
Genome browser
AA seq
1898 aa
AA seq
DB search
MKNSHVELDLDSFLVSDSDSEPDSDPSSVPHRTIDEILNASTSSSPSSSPPPSPPLLREQ
LNRRNQNDPSRRPQSELLRGFPSVTDPARRNPAPSTSLRQLPLPSLFAGVRSNVKPGAAL
AAAVAASRLVPTPHAAIIKSRRASSASSELLLSGAGESSSNQDEDDHEVLSSNGDSAGIE
NPSFDRESRLEDEDDGVVVASQDNEAKVMEVQASDIDDYEKNSKPDLVTSSSGVDVEEEV
STEQEGMAATEAGDADAMLVAPSAESLESQNLNENSDDVKVSNDEESSDGDVNKNDAKEE
EGGDDAFIPDDGSSVSGISELVEERIEEMEKERMSKREKLKSRSFRKQLVLAEEFEKKQA
YTGLHWEEGAAAQPMRLEGVKIGSTNLGYFDVDTSNIISRTISSQAFKRDHGSPQVLAVH
LNFIAVGTSKGVIVVVPSKYSSDTADQMESKMIWLGLQGERSHSPVTSVCFNQQGGLLLA
GYGDGHVTVWDVQRASAAKVITEHTAPVVYAFFLGRDSQGSRIFKVITSDNKGVVFKHTF
SWTLLLNMYTVKTQCLLDGQKNGMVLSASPLPDEYFGSSLASSKAGNTATPSSSISSMVG
GVVGVDSSWKLFNEDSSAVEEGVVVFVTYQTVLVVKLIPDLEVYAQLPRPEGVREGSMPY
TAWKCSMENSSKEAKDRVSFLAIAWDRRVQVAKLVKSKLKECAKWSLDSAAIGVVWLDDQ
LLVIPTVTGHLYLFTRDGVVIHQTSFSVDGSSGNDLISYHTYFTNVFGNPEKAYHNSVGV
RGASVYILGTARLVISRLLPWKERVDVLRRGGDWMGAFNMAMSLFNGQAHGVVDLPKTVD
AIREAIAPSLAELLRSYVDEVFSYITIAFSSQIEKNGVTNEPSSGTNNVNLEIEEQYNRV
GGVAVEFCVHINRMDLLFDEIFSRFVAVQQRDTFLELLEPYILKDMLGSLPPEIMQALVE
HYSRKGWLQRIEQCVLHMDISSLDFNQVVRICREHGLYGALLYLFNKGLDDFRSPLEELL
IVFRNSERQRSTAIGYRMLVYLKYCFLGLAFPPGHGTLVPTRLPSLRTELIQFLLEKSNS
HESSRCVSSPRIYLNLYHLLELDTEATLDVLRYAFAESEMVDHETLLLESGEVSFESKTD
GSIPEDRCNDMLIQNVIEALVHIIDGGFSQLDESGDPDDSKSDKKWPSKEDTSHLFEFVA
YYAARGRASIPKSVLAQILDYLTSDHILPTYNMSPKMRENQFLNLLQAVPVTDWDVAYVS
QLCEKAHFYQVCGYIHTIGRRYVAALESYMKEEEEPIHSFCYVNKMLSQLNGNEFTAFQS
AVIDRIPELLELSREGTFFLIIDNLKDNITRIQEQLHSHPRSMFLYLKTVIEVYLSGSLD
FSRLRKHEAVDSLGENTRRNIPKEAELYLEGLNGFPKFIQDNPVNVTDDMIELYLELLCK
YEPKSVLRFLETFDNYRVEHCLRLCQKYGIADAAAFLLERVGDAASALSLTLSGLSENFV
ALENAVACLISELKLGASEVATLEQSNSALELKEVNDIQGVLQACIGLCQRNTPRLNPEE
SEILWFRFLDTFSEPLMDSYREPRTVDEINKGTSSVKSLELCVDEAVDTIKWRIPRSNVA
GTHILRKLMSQFIKEIVEGMIGYVRLPTIMSKLLSDNGTQEFGDFKLTILGMLGTYGFER
RILDTAKSLIEEDTFYTMSLLKKGASQGYAPRSLLCCICNCPLTKTFSTLRVRVFNCGHA
THLQCEVSESETSSSGCPVCMTKKTTQSSSKGKSFYLDYGLISTVSSNTGTSQRASPYSY
ENEMIDHSHSQQISRFEMLTKLQKDQRLVQIESLPRLKLSPPAVYHEKVSRVSGFTPGES
SGKDSKPSQSGLMSKKTKAKGSIFRPRLAFGKEKTSRR
NT seq
5697 nt
NT seq
+upstream
nt +downstream
nt
atgaagaactcccacgtggaactcgatctcgactcgtttctagtatccgactccgactcc
gaacccgattcggatccttcctccgttcctcatcgtacaatcgacgaaatcctcaacgcc
tccacctcttcatctccctcctcttctccaccaccatctccgccgttactcagagagcag
cttaaccgccggaatcaaaacgatccgagtcgccgccctcaatctgaattacttcgcgga
ttccccagcgtaaccgatccggcgcggcggaatccggcgccgtctacttcattgaggcag
ttgccgttgccgtcgctgttcgcgggagtgaggtccaatgtgaagcccggcgcggcgctt
gcggcggctgtggctgcttccagattggtgcctacgccgcacgccgctatcatcaagtcg
aggagagctagtagtgccagtagcgagttgcttttgagcggcgctggagaatctagttcg
aatcaagatgaagatgatcacgaagttttatcatcaaatggtgattctgctggaattgag
aatccttcttttgatagagaatctcgcttagaggatgaggatgatggagttgtagttgca
agtcaagataacgaagctaaagtaatggaagttcaagctagtgatattgatgattatgag
aaaaactcaaagcctgacttagtaacttcctcctctggtgttgatgttgaagaagaagtc
tctacagaacaagaggggatggccgcaacggaagcaggagatgctgacgcaatgcttgta
gctccttctgcggagtctttagagtctcaaaatttgaatgaaaattctgatgatgttaag
gtaagtaatgatgaggagtcaagtgatggcgatgttaataagaatgatgctaaagaagag
gagggaggtgatgatgcttttattcctgatgatggaagctcagtgtccggcatttcggag
cttgtagaagagaggattgaggagatggaaaaagagaggatgagtaaaagggagaagcta
aagtcacgatcttttaggaagcagcttgtcttggctgaagagtttgagaagaaacaagca
tatactggtttgcattgggaggaaggagctgctgctcagccaatgagacttgagggtgtt
aagattggttcgacgaatctaggttactttgatgttgatactagcaatatcatcagccga
acgatttcatcgcaggcatttaagcgagaccatggttctcctcaggttttggctgttcat
ttgaattttattgcggtgggtacgtccaagggggtcatcgtcgttgtacctagtaaatat
tcttctgatactgcagatcagatggaatcaaagatgatttggcttggtttacaaggagaa
agatcgcattctccggttacctcagtttgcttcaatcagcaagggggactcctgctagct
gggtatggtgatggacatgttacagtttgggacgtgcagagagcgtcggcagcaaaagtg
atcaccgaacacactgcaccagtagtatatgcgttttttctaggccgggattctcaaggc
tctcgcatattcaaagtaattacaagtgacaataagggtgttgttttcaaacatactttc
tcctggactctgctgttgaatatgtatacagtaaaaacgcagtgtcttctcgatggacaa
aaaaatggaatggtcctatcggcatcacctcttcctgatgaatattttggaagctccttg
gcctcttctaaggcgggtaacactgcaactccatccagcagtataagcagcatggtgggg
ggtgttgttggggttgattcaagttggaagctctttaatgaggattcgtcagcggtggaa
gaaggggttgtcgtatttgtaacctatcaaactgtactggtggtaaagctcattccagat
ctggaggtgtatgcacaacttcctaggcctgaaggggttcgggagggttccatgccatac
acggcctggaaatgttcaatggaaaactcttctaaggaggctaaagatagggtttcgttt
cttgccattgcctgggatcgtagagttcaggttgccaagttggtaaaatcaaaattaaag
gaatgtgccaaatggtcgcttgacagtgctgctattggtgtggtttggctggacgatcag
ttgctggtgatcccaactgtgacgggccatttatatctgttcacaagagatggtgtggta
attcaccagacaagcttttctgtggatggttcttcagggaatgacctgatttcttatcat
acgtactttacaaacgtctttggaaatcctgagaaagcttatcacaactctgtgggtgtc
agaggggcttcagtatacattctcgggactgcacgtcttgttatctccagacttttgcca
tggaaggagcgggttgatgttttaaggagaggaggtgactggatgggtgcttttaacatg
gcaatgtcactttttaatgggcaagctcatggagttgttgacctccccaaaactgtggac
gccataagggaagcaatagcacccagtttagcagagttgctacgttcctatgtagatgaa
gtattttcttatatcacaatagcattttccagtcagattgaaaagaatggagtaactaat
gagccaagcagtggaaccaataatgtcaatttagagatagaagaacaatacaatcgtgtt
ggtggtgttgccgttgaattctgtgttcatattaacaggatggatttgctcttcgatgag
atattttccagatttgtggctgtacaacaaagagatacatttttggagcttttggagcct
tatattctaaaggatatgcttggatcgcttcctccagagattatgcaagctctggtagaa
cattatagtaggaaaggatggctacaaagaattgagcagtgtgttcttcacatggatatt
tcttccttagatttcaatcaggttgtcagaatttgccgtgagcatgggctttatggggcc
ttactctatcttttcaacaaagggttggatgatttcaggtcacctctggaggagcttttg
attgtcttccggaacagtgagagacaaaggtctacagccattgggtaccgaatgcttgtt
tatctaaagtactgctttcttggtttggcttttccaccagggcatggaaccctggttcct
acgcgcttaccatcccttaggactgagttgattcagtttctactggagaaatcaaactcc
cacgaatctagtagatgtgtatcatctccacggatttacttgaacctctaccatctgcta
gagttggatactgaagccactttagatgtcctaagatatgcatttgcagaaagtgaaatg
gtagatcatgagacccttttgctggagtctggtgaagtaagtttcgagtccaagaccgat
ggcagtatcccggaagatagatgtaacgatatgttgatccagaatgtgatagaggcccta
gttcatattattgatgggggctttagtcaacttgatgaatctggggatccagatgattca
aaatcagataaaaagtggccctctaaggaagatacgagtcatctatttgagtttgttgca
tattatgcagcacgtggaagagctagtattcccaagagcgtattggcacagattttagac
tacttaacatcagatcacattcttccgacttataacatgtctcctaaaatgagagagaac
caatttctaaaccttctgcaagccgtaccggtgactgattgggatgtagcttatgtatct
cagctttgtgagaaggcacatttttatcaggtctgtggctatattcatactattggtcga
cggtacgttgctgctttagaaagctacatgaaagaggaagaggaacccatacattcgttt
tgctatgtgaacaagatgctttcgcagttgaatgggaatgaattcacagcttttcaatct
gcagtaattgataggattcctgagctccttgaattgagcagagagggaacattcttcctg
atcattgataatctgaaagacaacatcacacgcattcaagagcagctccattctcatcca
agaagcatgttcctttatctcaagactgtcatcgaggtttacttgtctgggagtcttgat
ttttctcgtctaagaaaacatgaagcggtggacagtttgggtgaaaacactagaaggaat
atacccaaagaggctgagctttatttggaaggacttaatggctttcccaaattcattcaa
gataatccagtcaatgtgactgatgacatgattgagctttacttggagctattatgcaag
tatgaaccgaagtcagtcttgagattcctcgaaacgtttgacaactacagggtggaacac
tgtctacgcctctgccagaaatatggaattgcagatgcagcagcatttctcttggagagg
gtcggtgatgcagcaagtgctttgtcacttacactctctggactcagtgaaaattttgtc
gcgcttgaaaacgcagtggcttgcctaatatcagaactaaagttgggtgctagcgaagta
gccaccttggaacaatccaacagcgctctagagttgaaggaggtaaatgacatacaaggt
gttctgcaagcctgtataggattgtgccaacgcaacactcctcgccttaatcctgaagag
tcagagattctttggtttcgctttcttgacactttctcagagcctttgatggattcatat
cgggaaccaaggactgtcgatgaaataaacaaaggcacttccagcgttaaatcattggaa
ctgtgtgtagatgaagcagttgacacaatcaagtggaggattccgcgatctaatgtcgcc
ggtacacatatcctgaggaagctcatgtctcagtttatcaaagagattgttgaaggaatg
ataggatacgttcgtcttccaacaatcatgtcaaaacttctttctgacaacggtactcaa
gagtttggtgatttcaagcttacaatactgggaatgcttggaacatatggcttcgagcgg
agaatactggatactgcaaagtctttaatcgaagaggatacattctacaccatgagttta
ctcaagaaaggtgcttctcaaggttacgcacccagaagtttgctttgctgtatatgcaat
tgtcctctcaccaagacgttctctactcttcgtgtacgtgttttcaactgtggccacgca
acgcatctgcaatgtgaagtgtcggagagtgaaacatcttcatcaggttgtcctgtttgt
atgaccaagaagaccacacagagttcatcaaaaggtaaatcattctacttagactatgga
ctgataagcacagtttcttcaaacaccggcacttcacaacgcgcttcgccttactcttat
gagaatgaaatgatcgatcattctcatagccagcaaatatcacgatttgaaatgctaacc
aagctacagaaagatcagagactggtacagatagaaagcttgcctcgattaaagctgtca
cctcctgctgtgtaccacgagaaagtgagcagagtctcgggttttacaccgggagagagc
agcggtaaagactcgaaaccatcccaaagtggactgatgagtaagaaaacgaaagcaaaa
ggatctatctttcggccaagacttgcttttggaaaggagaagacgagcagaagataa
DBGET
integrated database retrieval system
