Brassica rapa (field mustard): 103836967
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Entry
103836967 CDS
T03449
Name
(RefSeq) eukaryotic initiation factor 4A-III homolog
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03013
Nucleocytoplasmic transport
brp03015
mRNA surveillance pathway
brp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103836967
09122 Translation
03013 Nucleocytoplasmic transport
103836967
03015 mRNA surveillance pathway
103836967
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brp03019
]
103836967
03041 Spliceosome [BR:
brp03041
]
103836967
03009 Ribosome biogenesis [BR:
brp03009
]
103836967
03012 Translation factors [BR:
brp03012
]
103836967
Enzymes [BR:
brp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103836967
Messenger RNA biogenesis [BR:
brp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
103836967
mRNA cycle factors
Stress granule specific factors
103836967
Spliceosome [BR:
brp03041
]
Complex C
Other components
EJC/TREX
103836967
Ribosome biogenesis [BR:
brp03009
]
Eukaryotic type
90S particles
Helicases
103836967
Translation factors [BR:
brp03012
]
Eukaryotic type
Initiation factors
eIF-4
103836967
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
Utp25_C
Helicase_RecD
Flavi_DEAD
CMS1
AAA_22
TniB
DUF1198
Motif
Other DBs
NCBI-GeneID:
103836967
NCBI-ProteinID:
XP_009111544
UniProt:
M4FAW6
LinkDB
All DBs
Position
A01:complement(22870222..22872762)
Genome browser
AA seq
408 aa
AA seq
DB search
MAEANPGRGGGRRGGGPMDDDKLVFETTEGIEPITNFNDMGIKEDVLRGVYEYGFEKPSA
IQQRAVMPILQGRDVIAQAQSGTGKTSMIALSVCQIVDTSSREVQALILSPTRELASQTE
KTIQAIGLHANIQAHACIGGKSVGEDIRKLENGVHVVSGTPGRVCDMIKRRSLRTRGIKL
LILDESDEMLSRGFKDQIYDVYRYLPPDLQVCLVSATLPHEILEMTSKFMTEPVKILVKR
DELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLSEKMRTNNFT
VSSMHGDMPQKERDEIMNQFRSGDSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIH
RIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atggcggaagcgaatcctggccgtggaggaggaaggagaggcggcggaccaatggacgac
gacaaattagtcttcgaaacaaccgaagggatcgagcccatcaccaatttcaacgacatg
gggatcaaggaagacgtactccgcggcgtctacgagtacggcttcgagaagccctccgcg
attcagcagagagccgtcatgcctattctccaaggccgcgatgtcatcgcccaagctcag
tccggtaccggaaaaacctccatgattgctctctccgtctgccaaatcgttgacacttcc
tctagagaagttcaggcgttgatattgtctccgacgagggagctggcttcgcaaacggag
aagactattcaagctattgggttgcacgctaatattcaggcgcatgcgtgtattggtggg
aagagcgttggagaagatatcaggaagctggagaatggtgtccatgttgtgtctgggacg
cctgggcgtgtatgtgatatgattaagaggaggagtctgcgtaccaggggtattaagctt
ttgattcttgatgaatctgatgagatgctgagcagagggttcaaggaccagatttatgat
gtttacagatatcttccacctgatcttcaggtttgcttggtttctgcaactcttcctcac
gagattttggagatgacatcgaagtttatgacggagccagtgaagatacttgtgaagcgt
gatgagttgactcttgaaggcattaaacaattttttgttgctgttgagaaggaggaatgg
aagtttgatacactctgtgatctttatgacacgcttactatcactcaagctgttatcttc
tgcaacactaaacgaaaggtggattggctaagtgagaaaatgaggactaacaacttcaca
gtctcatcaatgcacggtgacatgcctcagaaggaaagagacgaaatcatgaatcagttc
cggtcaggcgacagtcgtgttttgatcacgacagatgtatgggcacgtgggattgacgtg
cagcaagtttctctcgtcatcaattatgatctccccaacaaccgtgagctctacatccat
cgtattggacgatctggtcgtttcgggcgcaagggtgttgcgatcaactttgttaaaagc
gatgacatcaagatcctcagggacattgagcagtactacagtacccagattgacgagatg
ccaatgaatgtagctgatcttatctaa
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