Brassica rapa (field mustard): 103837080
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Entry
103837080 CDS
T03449
Name
(RefSeq) transcription initiation factor TFIID subunit 5 isoform X1
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
103837080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
brp03021
]
103837080
03036 Chromosome and associated proteins [BR:
brp03036
]
103837080
Transcription machinery [BR:
brp03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
103837080
Coactivators
SAGA/TFTC/STAGA complex
103837080
Chromosome and associated proteins [BR:
brp03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
103837080
STAGA complex
103837080
TFTC complex
103837080
SAGA complex
103837080
SLIK complex
103837080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
TFIID_NTD2
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
EIF3I
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
Beta-prop_EML
ANAPC4_WD40
Beta-prop_IFT122_1st
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_IFT140_1st
Beta-prop_SCAP
Beta-prop_RIG_2nd
Beta-prop_WDR19_1st
Beta-prop_DCAF4
Beta-prop_EIPR1
Beta-prop_Vps41
Beta-prop_SPT8
WD40_RFWD3
Beta-prop_Nup120_160
Beta-prop_HPS5
Beta-prop_WDR35_TULP_N
eIF2A
Beta-prop_RIG_1st
Beta-prop_NWD2_C
RAB3GAP2_N
WD40_like
LisH
Cytochrom_D1
Beta-prop_DCAF12
Motif
Other DBs
NCBI-GeneID:
103837080
NCBI-ProteinID:
XP_009111656
UniProt:
M4F625
LinkDB
All DBs
Position
A09:complement(3484477..3489400)
Genome browser
AA seq
668 aa
AA seq
DB search
MDPEQVDEFVMGYLKKKGFNNAAKQLQEALHHNNGGTFNSTDYHNDPELTKLIRSFSQSE
NDPTRYRDGYSKLRSWAYNSLDLYKHELLRVMYPVFIHCYMDLVGKGHTQEARAFFNSFR
KDHEMIHLRDLQKLEGVLVPSHLEEMEFARSLRQSKVNIKICQYSYDLLLQYLHRTESTL
MLGIINEHINFQVYSGQPNSSSDDIDAVTIVGSFQETADHINQKEIQWGLLEDSLEDRLE
KTGSLLSDSEKGQGESKDGDVDDSKKRSNEIGKQGSSLKKLKKDKAGNATAKVARQETSI
VSPAPRVKPELALPVMSTDVEESILEDLRNRVQLSSVAMPSVSFYTFVNTHNGLNCASIS
HDGSLVAGGFSDSSIKVWDMAKIGQAGSGALQGESDTNDQNVGPNGRRNYTLLLGHSGPV
YSATFSPPGDFVLSSSADTTIRLWSTQLNANLVCYKGHNYPVWDVQFSPFGHYFASCSHD
RTARIWSMDRVQPLRIMAGHLSDVDCVQWHPNCNYIATGSSDKTVRLWDVQTGECVRIFI
GHRSMVLSLAMSPDGRYMASGDEDGTIMMWDLSTARCITPLMGHNSCVWSLSYSGEGSLL
ASGSADCTVKLWDVTSSTKLTKAEEKNGNTNRLRSLRTFPTKSTPVHALRFSRRNLLFAA
GALSKPAS
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggatccagagcaagtggacgagttcgtaatgggctacttgaagaagaagggcttcaac
aacgcagctaaacagcttcaagaagctcttcaccacaacaatggtggcaccttcaattcc
actgattaccataacgatcctgagctcaccaagcttattcgctccttctcccaatcagag
aatgatccaactcggtaccgtgacggttacagcaaacttaggtcatgggcttataactcg
ttggatctatataaacatgagttgctccgagtgatgtatcctgtgtttattcattgttac
atggacctggttggtaaagggcacactcaagaagcgagagccttctttaacagcttccgg
aaagatcatgaaatgatacatttacgggatcttcagaagctggaaggcgttcttgttcct
tctcatctagaggagatggagtttgctcgttctcttagacaaagcaaggtcaacatcaag
atttgtcagtattcatatgatctgttgcttcagtatctacataggacggaatctacttta
atgcttggtattattaacgagcacatcaatttccaagtctactcgggacaaccaaattcc
tcatctgatgacatagacgctgtcaccattgttgggagttttcaggagacagctgatcac
attaatcaaaaagaaatacagtggggattgcttgaagactcgctcgaagatcgcctcgag
aagacgggaagtctactgtctgattctgagaagggacaaggagaaagtaaagacggggac
gtggacgatagtaagaaaagatccaacgaaattggaaagcaaggctcttccttaaaaaag
ttaaagaaggacaaagcaggaaatgcaacagcaaaggttgcacgtcaggagaccagcata
gtatcgccggcaccacgtgtgaaaccggaacttgccttgccagtcatgtcaacggatgta
gaagaatccatccttgaagacctgagaaaccgtgtgcagttgagtagtgttgcaatgcca
tctgtcagcttttatacatttgttaatactcataacggcttaaactgtgcatctatatct
catgatggttctctggttgctggtggcttctcagattcatcaataaaggtctgggacatg
gcgaagataggacaagctggtagtggtgctttgcaaggtgaaagtgatacaaatgatcaa
aacgttggaccaaatggcagaagaaattatacattattactgggtcactcagggccagtt
tactcggccactttcagtccacctggagattttgtattatcttcttcagcagatacaacg
atacggctgtggagcacacaactaaatgccaatcttgtgtgctacaaaggtcacaattac
cctgtatgggatgtccagtttagccctttcgggcattactttgcaagctgttctcatgat
cgcactgcacggatttggtcgatggaccgagtacaacctctgcggataatggcagggcat
ctatctgatgttgattgtgtacagtggcatcccaattgtaactacattgcgaccggttct
agtgataagacggtgagactctgggatgtgcaaactggggaatgtgtcaggatattcatt
gggcacaggagtatggttttatcattggcgatgtcaccagatgggagatatatggcctct
ggtgatgaagatggaaccataatgatgtgggacctctcaacagctcgctgcatcacacct
ctcatgggccataattcatgtgtatggagtctctcttacagcggcgaggggtctcttctg
gcttctggatctgcggactgcacagtgaaactgtgggacgtcacttcaagcaccaaattg
accaaggccgaggaaaaaaatggaaacacaaacagactgcgctcactcaggactttcccc
acgaagtccacaccagttcacgctctcagattttctcggagaaatctgctgtttgctgca
ggagcgctctcaaaacccgcaagctga
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