Brassica rapa (field mustard): 103837167
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Entry
103837167 CDS
T03449
Name
(RefSeq) sm-like protein LSM4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03018
RNA degradation
brp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103837167
09123 Folding, sorting and degradation
03018 RNA degradation
103837167
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brp03019
]
103837167
03041 Spliceosome [BR:
brp03041
]
103837167
Messenger RNA biogenesis [BR:
brp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
103837167
mRNA degradation factors
5'-3' decay
Lsm complex
103837167
Spliceosome [BR:
brp03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
103837167
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
103837167
NCBI-ProteinID:
XP_009111743
UniProt:
A0AB40E7A3
M4F6A6
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All DBs
Position
A09:3067962..3069919
Genome browser
AA seq
129 aa
AA seq
DB search
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEEKTRTDRKPPGVGRGRGRGMDDGGARGRGRGAPMAKMSG
NRGAGRGRG
NT seq
390 nt
NT seq
+upstream
nt +downstream
nt
atgcttcctctttcgctactcaagactgctcaaggccatcccatgcttgtggagctcaag
aatggagagacatacaatgggcatttagtaaattgcgatacgtggatgaacatccatctg
cgtgaagttatctgcacatcaaaggacggagacaggttttggaggatgccggaatgttat
atccgtggtaacactatcaagtaccttcgtgttcctgatgaggtgattgataaagtacag
gaggagaagacccgcacagataggaaaccaccaggggtaggacgtggaagaggacgtggt
atggatgatggaggggccagaggcagaggccgaggagctccaatggctaagatgagtggc
aacagaggagcagggcgtgggcgtggttga
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