KEGG   Brassica rapa (field mustard): 103837167
Entry
103837167         CDS       T03449                                 
Name
(RefSeq) sm-like protein LSM4
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
brp  Brassica rapa (field mustard)
Pathway
brp03018  RNA degradation
brp03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:brp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    103837167
  09123 Folding, sorting and degradation
   03018 RNA degradation
    103837167
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:brp03019]
    103837167
   03041 Spliceosome [BR:brp03041]
    103837167
Messenger RNA biogenesis [BR:brp03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     103837167
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     103837167
Spliceosome [BR:brp03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    103837167
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 103837167
NCBI-ProteinID: XP_009111743
UniProt: A0AB40E7A3 M4F6A6
LinkDB
Position
A09:3067962..3069919
AA seq 129 aa
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEEKTRTDRKPPGVGRGRGRGMDDGGARGRGRGAPMAKMSG
NRGAGRGRG
NT seq 390 nt   +upstreamnt  +downstreamnt
atgcttcctctttcgctactcaagactgctcaaggccatcccatgcttgtggagctcaag
aatggagagacatacaatgggcatttagtaaattgcgatacgtggatgaacatccatctg
cgtgaagttatctgcacatcaaaggacggagacaggttttggaggatgccggaatgttat
atccgtggtaacactatcaagtaccttcgtgttcctgatgaggtgattgataaagtacag
gaggagaagacccgcacagataggaaaccaccaggggtaggacgtggaagaggacgtggt
atggatgatggaggggccagaggcagaggccgaggagctccaatggctaagatgagtggc
aacagaggagcagggcgtgggcgtggttga

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