KEGG   Brassica rapa (field mustard): 103837453
Entry
103837453         CDS       T03449                                 
Name
(RefSeq) histone deacetylase 6
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
brp  Brassica rapa (field mustard)
Pathway
brp03082  ATP-dependent chromatin remodeling
brp03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:brp00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    103837453
   03083 Polycomb repressive complex
    103837453
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:brp03036]
    103837453
Enzymes [BR:brp01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     103837453
Chromosome and associated proteins [BR:brp03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     103837453
   HDAC complexes
    Sin3A-HDAC complex
     103837453
    BRAF-HDAC complex
     103837453
    REST complex
     103837453
    SHIP complex
     103837453
    MiDAC complex
     103837453
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     103837453
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    103837453
  Chromatin remodeling factors
   NuRD complex
    103837453
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 103837453
NCBI-ProteinID: XP_009112060
UniProt: A0A397Y1L9
LinkDB
Position
A09:complement(4445662..4448344)
AA seq 470 aa
METDESGVSLPSGPDGRKRRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHSLIVHYNLHRR
LEISRPNLADASDIGQFHSPDYVDFLRSVSPESMGDHSAARNLRRFNVGEDCPVFDGLFD
FCRASAGGSIGAAVKLNRQDADIAINWGGGLHHAKKSEASGFCYVNDIVLGILELLKMFR
RVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIRDIGAEKGKYYALNVPL
NDGMDDESFRSMFRPLIQKVMDVYQPEAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFL
RSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYFEYFGPDYTLHVDPG
PMENLNTPKDMEKIRNTLLEQLSGLIHAPSVQFQHTPPVNRVLDEPEEDLEERPKPRIWS
GTANYESDSDDDEKSPPLVGYSGINDPPMDRDSTGEDDMEDEPEVNPPSS
NT seq 1413 nt   +upstreamnt  +downstreamnt
atggagacagacgagagcggcgtatcattgccgtcaggtcccgacggacgcaagcgtcga
gtcagctacttctacgagccgacgatcggcgactactactacggccaaggacacccgatg
aagcctcaccggatccgtatggctcacagcctcatcgtacactacaacctccaccgtcgc
ctcgagatcagccgccctaacctcgccgacgcctccgacatcggccagttccattccccg
gactacgtcgatttcctccgctccgtctcgccggagtccatgggcgatcactccgccgcg
cggaacctgaggcgattcaacgtcggcgaggattgtcccgtcttcgacgggcttttcgac
ttctgccgcgcttccgccggaggttcgattggcgctgcggttaagttgaaccggcaggat
gcggatattgcgattaattggggcggtgggcttcaccatgcgaagaagagtgaagcctct
gggttttgctatgtgaacgacatcgttttggggattctcgagttgcttaagatgtttagg
cgagttctctacgttgatatcgatgtgcaccatggagatggagtagaagaagcgttttac
accaccgacagagttatgacagtttcttttcacaagttcggagactttttcccaggaact
ggtcacatcagagacattggcgctgagaaagggaaatactacgctctaaatgttccatta
aacgatggtatggacgatgagagtttccgcagcatgtttagacctcttatccagaaggtt
atggatgtgtatcagccagaggcagtcgttcttcagtgcggggctgactcgttaagcggt
gatcgtttgggttgctttaacttatcagtcaagggtcatgctgattgcctccggttcttg
agatctttcaacgttcctctcatggtcttgggtggtggagggtatactatacgaaatgtt
gcccgttgctggtgttatgagactgcagttgcggttggagtagagccggacaataagctc
ccgtacaatgagtactttgagtatttcggtccagactatacgcttcacgtcgatccaggc
ccaatggagaatttgaacacaccaaaagatatggagaagataaggaacacattgctagag
caactttcgggactaatacacgcacctagcgtgcagtttcagcacacacctccagtgaat
agagttttggatgagccggaagaagacttggaggaaagaccaaagcctcggatttggagt
ggaactgcgaattatgaatcagacagtgacgatgatgagaaatcaccaccccttgttggt
tactcgggtattaatgacccacctatggacagggactctactggtgaagatgatatggaa
gatgagcctgaagtgaatccaccatcctcttaa

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