Brassica rapa (field mustard): 103837456
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Entry
103837456 CDS
T03449
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 30 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103837456
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
brp03041
]
103837456
03009 Ribosome biogenesis [BR:
brp03009
]
103837456
Enzymes [BR:
brp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103837456
Spliceosome [BR:
brp03041
]
Complex A
U1 snRNP components
U1 related factors
103837456
Complex B
103837456
Ribosome biogenesis [BR:
brp03009
]
Eukaryotic type
Pre-60S particles
Helicases
103837456
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
103837456
NCBI-ProteinID:
XP_009112063
UniProt:
M4F457
LinkDB
All DBs
Position
A09:complement(4448735..4452507)
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AA seq
591 aa
AA seq
DB search
MSSHDRRFADPNSYRQRSPAPVRSSQPMDPSAAPYNPRYSGGVGGGGGYRPAPVMSGDGS
GYGHYPSFHPPSNGFSVGRGGGRGGYGGYGGVRGGYGGGGGRGGSGRRELDSVSLPKQSF
GNLVHFEKNFYVESPVVQAMTEEDVALYRTEKDISVEGRDVPKPIKMFQDANFPDNILDA
IAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGP
IVLILAPTRELAVQIQEESRKFGLRSGVRSTCVYGGAPKGRQIHDLRRGVEIVIATPGRL
IDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLLWSATWPREVET
LARQFLRDPYKAIIGSADLKANQSINQVIEIVQTPEKYSRLLTLLKQLMDGSKILIFVET
KRGCDQVTRQLRMDGWPALAIHGDKNQTERDRVLSEFKSGRSPIMTATDVAARGLDVKDI
KCVVNYDFPTSLEDYIHRIGRTGRAGAKGMAMTFFTHDNAKFARELIKILQEAGQVVPPT
LSALVRSSGSGGGGGGGGRSFRSRGGGRGGFGDKRPRSTSNFVPHGGKRTW
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
atgagctcccatgatcgccgattcgctgatcccaattcgtatcgtcaacgctctcccgca
ccggttcgttcgtctcagccgatggatccttccgccgcaccgtacaatccacgctacagc
ggtggtgttggtggaggaggaggatatagaccggctcctgtaatgtccggtgacggttcc
gggtacggtcattacccgtcttttcacccgcctagtaatggcttctccgtcggtcgcggc
ggaggaagaggcggttacggtgggtacgggggtgtgaggggtgggtacggtggaggagga
ggacgcggtggatcgggtagaagagagctggatagcgtttctcttccgaaacagagtttt
gggaatcttgttcatttcgagaagaatttctacgtggagagtcccgtggtgcaggcgatg
acggaggaggatgttgcgttgtataggactgagaaggatatatctgttgaagggcgtgat
gttcctaagcctattaagatgttccaagatgctaactttccagataatattctcgacgca
attgctaagttgggatttactgagccaacaccaatacaagctcagggatggccaatggct
ttgaagggtagggatttgattggtattgctgagactggctctggtaagactttggcttac
ttgttaccagcgttggtccacgtaagtgcacaacctcgattgggtcaagatgatggaccc
atcgttttaatattggctcccacgagagaattagcagttcagattcaagaggaatcaagg
aagttcgggctgcgatctggtgttagaagcacttgtgtctatggaggtgctcctaaagga
cgtcagattcacgatcttagaagaggtgttgagattgtaattgctacacctggtcgtttg
atcgatatgttggagtgccaacacactaatttgaagagggtgacttaccttgtgctggac
gaggctgacagaatgttagacatgggatttgaaccccaaattagaaagattgtgtctcag
atccgacctgacagacagacactgctttggagtgcaacatggccacgagaagttgaaact
ctcgccaggcagtttctacgagatccgtacaaggccattattggatcagctgatctaaaa
gctaaccagtctattaaccaagtaatcgagattgtacagacgccagagaaatacagcagg
ctccttacactgcttaagcagctaatggatggaagtaaaatcttaatctttgtggagaca
aagagaggttgtgatcaagtgactagacaactgagaatggatggatggccagctcttgcc
atacacggtgacaaaaaccaaacggaaagagatcgtgtcttgtcagaatttaagagcgga
agaagcccgataatgactgccactgacgtagcagcaaggggacttgatgtgaaggacata
aagtgtgtggttaactatgatttcccaacttcattggaggattacatccacaggattggt
cgaaccgggcgtgcaggggctaaaggaatggccatgacattcttcacacatgacaatgct
aagtttgcaagagagcttataaagatccttcaagaagctggtcaagttgtacctcccact
ctctctgccctagtccgatcttccggttctggtggtggtggtggtggaggtggacgtagt
ttcaggtcaagaggaggaggacgtggtggatttggagataaacggccaagatcaacctca
aactttgtacctcatggtggcaaaaggacttggtag
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