Brassica rapa (field mustard): 103837873
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Entry
103837873 CDS
T03449
Name
(RefSeq) probable rhamnogalacturonate lyase B
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
brp
Brassica rapa (field mustard)
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
103837873
Enzymes [BR:
brp01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
103837873
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GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
RhgB_N
CarbopepD_reg_2
HATPase_c_4
Motif
Other DBs
NCBI-GeneID:
103837873
NCBI-ProteinID:
XP_009112504
UniProt:
M4FBP0
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Position
A09:39593611..39599797
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AA seq
675 aa
AA seq
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MKLGAPRKKSGWVMLQVLLLHLLVQSVHSQNSRNKLNITNPGQSIPGLAVQLRRVSNEKV
VVDNGIIQVTFSSPQGLITGIKYNGIDNVLDDEIDDRGYWDIVWYEPEKALEIDKLEGTK
FEIITQNEEQVEISFTRTWTISKRGSLVPLNVDKRYIIRTGVSGIYMYGILERLEGWPDV
DMDQIRIVFKLNPKKFDFMAISDDRQRSMPSMADRDNAKILAYKEAVLLTNPKNPMFKGE
VDDKYMYSMEDKDNNVHGWISSDPPVGFWMITPSDEFRLGGPIKQDLTSHAGPITLSMFT
STHYAGKEMRMDYRNGEPWKKVFGPVLAYLNSVSPKDSTLRLWKDAKRQMAVEVRSWPYD
FVNSEDYPLSHQRGTIEGQFYIKDRYVSRLNIYGKFAFVGLAPCGEAGSWQTESKGYQFW
TKADRKGRFIIDNVRAGNYSLYAWGYGFIGDYKYEQNITITPGSQMNVGPLVYEPPRNGP
TLWEIGVPDRTAGEFYIPDPYPTLMNKLYVNPLQDRFRQYGLWDRYADLYPQNDLVYTVG
VSDYKRDWFFAHVTRNVGNNTYDSTTWQIIFNLENVNRVGLYTLRIALASAADSELQVRV
NNPKSDHIFTTGLIGKDNAIARHGIHGLYRLYSINVAGDLLSVGDNTIYLTQSRSVGPFQ
GVMYDYIRLESPFTT
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atgaaactcggagctccgagaaagaagtcgggttgggttatgctccaagttcttcttctg
catctccttgttcaaagtgttcattctcagaactcacgaaacaaactaaacatcacaaat
cctggacaaagtataccaggcttagcagttcagctaaggagagttagtaatgagaaggtg
gtagttgataatggtattattcaagttactttctcgagcccacaaggtttgataactgga
atcaaatataatggcatcgataacgtgttggacgacgaaattgacgatcgtgggtattgg
gacatagtatggtatgaaccggaaaaggcattggaaattgacaaactagaaggaactaaa
ttcgaaatcataactcagaacgaagaacaagttgaaatttcatttacaaggacgtggaca
atctcgaaacgtggctccttggtcccccttaacgtagataaaaggtacattattcgaact
ggtgtctccggaatatacatgtacggtatattagagaggttagaaggttggcccgacgtg
gacatggaccagattaggatcgtcttcaagctcaaccccaaaaaatttgatttcatggcg
atatctgatgaccggcagagaagcatgccatccatggctgatcgagacaatgctaagata
ttagcttacaaagaagctgttctcttgacaaacccgaagaaccctatgtttaaaggagag
gtggacgataagtatatgtactcaatggaagacaaagacaacaacgttcatggttggatc
tcgtcggacccaccggttgggttttggatgataactccaagcgatgagttccgacttggt
gggcccatcaagcaagacctcacctctcacgccggacccatcaccctgtccatgtttacg
agcactcattacgcggggaaagagatgagaatggattatagaaatggagagccatggaag
aaggtttttggacctgtcttggcttatctcaactctgtctctcccaaagattccactctt
cgtctctggaaagatgctaaacgacagatggctgtagaagttagaagctggccttatgat
tttgtaaattcagaagactatcccctttctcatcagagaggaacgatagaaggtcaattc
tatatcaaagaccgatacgtgtcaagactaaatatatatgggaaatttgcttttgttggt
ttggcaccatgtggtgaagccggttcatggcaaaccgaatcaaaggggtatcagttttgg
acgaaagctgacagaaaaggaagattcataatagataatgtgagggcaggcaattatagt
ctctacgcatggggttatggttttatcggtgactataaatatgaacaaaacattaccatc
acgccaggtagccagatgaatgtagggcctctagtgtatgagccacctagaaacggtcca
acgttgtgggaaataggtgtaccggaccgaacagccggagagttctatataccggatcct
taccctacacttatgaataagctttatgttaacccacttcaagatagattcagacaatat
ggattgtgggatcgttacgcagatttataccctcaaaacgatcttgtctacacagtcggt
gttagtgattataaaagagattggttctttgcacatgtcaccagaaatgttggaaataat
acatacgattcaacgacatggcaaatcatatttaacctggaaaacgtgaaccgggtcggt
ctctacacgctcagaatagctctagcctcagccgctgattccgagttacaagttcgggtc
aacaatccgaagtccgatcatattttcacgaccggtttaatcggaaaagacaatgccatt
gcaagacatgggattcatgggttatatagattgtatagtatcaacgttgctggagattta
ctaagtgttggtgataataccatatatttaactcaatcgagaagtgtaggaccgtttcaa
ggtgttatgtatgattatattcgtcttgaaagtccttttacaacttga
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