Brassica rapa (field mustard): 103838580
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Entry
103838580 CDS
T03449
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103838580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brp03019
]
103838580
03041 Spliceosome [BR:
brp03041
]
103838580
03009 Ribosome biogenesis [BR:
brp03009
]
103838580
03016 Transfer RNA biogenesis [BR:
brp03016
]
103838580
Enzymes [BR:
brp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103838580
Messenger RNA biogenesis [BR:
brp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
103838580
Spliceosome [BR:
brp03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
103838580
Complex C
U4/U6.U5 tri-SnRNP related factors
103838580
Ribosome biogenesis [BR:
brp03009
]
Eukaryotic type
Pre-60S particles
Helicases
103838580
Transfer RNA biogenesis [BR:
brp03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
103838580
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
ResIII
DEXQc_Suv3
Helicase_C
ATPase_2
nSTAND3
Mt_ATP-synt_D
Motif
Other DBs
NCBI-GeneID:
103838580
NCBI-ProteinID:
XP_009113279
LinkDB
All DBs
Position
A09:10906340..10911605
Genome browser
AA seq
991 aa
AA seq
DB search
MGSVKRKSVEESSDCAPPQKIQREDDDSTQIINEELVGCVHDVSFPENYLPPAPSSQENN
KPPAKEFPFTLDSFQSEAIKCLDNGESVMVSAHTSAGKTVVASYAIAMSLRENQRVIYTS
PIKALSNQKYRDFKEEFSDVGLMTGDVTIDPNASCLVMTTEILRSMQYKGSEVMREVAWI
IFDEVHYMRDSERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWVAKVHKQPCHIVYT
DYRPTPLQHYVFPAGGNGLYLVVDEKAKFHEDSFQKSLNALVPANDADKKRENGKSQKGL
MLGKLGEESDIFKLVKMIIQRQYDPVILFSFSKKECEALAMQMSKMDLNSDDEKDSVETI
FTSAIDMLSDDDKKLPQVSNILPILKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATE
TFSIGLNMPAKTVVFTNVRKFDGDKFRWLSSGEYIQMSGRAGRRGIDKRGICILMVDEKM
EPAVAKSMLKGSADSLNSAFHLSYNMLLNQLRSEDGDPENLLRNSFFQFQADRAIPDLEK
QIKALQEERDSMVIEEEESLKKYYNLILQYKSLKKDIREIVFSPKYCLPFLLPNRAVCLD
CANDDGEPRSFSIEDQDTWGVIMKFNKVKSLSEDDDNRRPEDANYTVDVLTRCLVSRDGF
GKKKMKPVPIKERGEPVVVSVPLSQIKSLSSAIMNIPKDYLQLEARENALKKVSELLSRH
PDGIPLDPEVDMKIRSSSYKKTVRRLEAVENLFEKYKIAKSPLIAEKLKVLHMKEELTAK
IKSLKKAVRSSTALAFKDELKARKRVLRRLGYITSDGVVELKGKVACEISSAEELTLTEL
MFSGVFKEAKVEELVSLLSCFVWRERLPDAAKPREELDLLFIQLQDTARRVAEVQLDCKV
DIDVESFVHSFRPDIMEAVYAWAKGSKFYEIMEIARVFEGSLIRAIRRMEEVLQQLIVAA
KSIGETQLEAKLEEAVSKIKRDIVFAASLYL
NT seq
2976 nt
NT seq
+upstream
nt +downstream
nt
atgggctcggtgaagagaaaatcagtggaggaatcttctgattgtgctccgccgcagaag
attcagagagaagatgatgattccactcagatcatcaacgaagagctcgtgggctgcgtt
cacgacgtctccttccctgaaaactaccttcctcctgctccctcctctcaagaaaacaac
aaaccaccggccaaagagttccctttcacccttgactccttccagtctgaagctatcaag
tgtctcgataatggcgaatctgtcatggtttcagctcatacatcagctggtaaaacagtt
gtggcatcctatgcgatcgccatgtctctgagagagaaccagagggttatttacacctct
cctataaaggcactcagtaaccagaagtacagagatttcaaggaagagttttctgacgtt
ggtttgatgactggagatgtcactattgatcctaacgcctcttgtctggtcatgactaca
gagatcttgcgtagcatgcagtataaagggtcagaggtaatgagggaggttgcgtggatt
atttttgatgaggtgcattacatgcgtgatagtgaaagaggtgtggtttgggaagagagt
attgttatggctcccaagaattctcgttttgtgtttctttctgcaactgttcccaatgcc
aaggagtttgctgattgggttgcaaaggttcacaaacaaccatgccatattgtttacact
gattatcggccaacaccgcttcagcactatgtctttcctgccggaggaaatgggctttac
ttggttgtggatgaaaaggctaaatttcacgaggatagcttccagaaatctcttaacgca
ctggttcctgctaatgatgctgacaagaaaagagagaatggaaagtctcagaaggggttg
atgcttggaaaacttggtgaagaaagtgatatcttcaagttggtgaaaatgataattcag
aggcagtatgatcctgtgattttgttcagtttcagcaaaaaggaatgtgaggcacttgct
atgcagatgtctaagatggacctaaacagtgacgatgagaaagattccgtggagacaatc
tttactagtgcaatagatatgctttcagatgatgataagaagctacctcaggtttcaaac
attttacccatcttaaaacgcggtatcggggttcatcattcgggtctgcttccgattttg
aaagaagtgattgagatattatttcaagaaggtctgattaagtgtttgtttgcaacggag
acatttagtatcgggttgaacatgccggcaaagacggttgtgtttacaaatgtacgcaag
tttgatggagacaagttccggtggctatctagtggcgagtacattcagatgagtggccgt
gctggacgtcgagggattgacaaacgaggtatctgcatcctcatggttgatgagaagatg
gaacccgcggttgctaaatcaatgctcaaaggaagtgctgattctttgaacagtgccttc
catttgagctataacatgcttctaaaccagttgcggagtgaagatggtgatcctgagaat
cttctccgcaattctttctttcagtttcaagctgaccgtgctatcccggatctcgagaag
caaataaaagctctccaagaagagagagactctatggtgattgaagaagaagaaagcttg
aagaagtactataacctgattttgcaatataagagtctgaagaaggatatacgtgaaatt
gtcttctctccaaagtactgcttaccctttttgctgccaaacagagctgtttgtctagac
tgcgctaatgatgatggagagccacgatcattcagcattgaagaccaagatacgtgggga
gtgataatgaaattcaacaaagtcaaaagcttatctgaagatgatgataatagaagacca
gaggatgcaaactacaccgtagatgtactgactagatgtttggtcagcagagatgggttt
ggcaaaaagaaaatgaagcctgtgccaattaaagagcgtggtgagcccgttgtggtctct
gttcctttatctcagattaagagtttaagcagtgcaatcatgaatataccgaaagattac
ttacaacttgaagctagagagaatgctctaaagaaggtttctgagttactctctagacat
cctgatggaatacccctagatcctgaagttgacatgaagattcggagcagctcatacaaa
aagacagttcgtcgattggaggctgtggaaaatctatttgaaaaatacaaaatagcaaaa
tctccactcatagcagagaagctgaaagttctacacatgaaggaagaactaacagccaag
atcaaatcacttaagaaggctgtccgatcctcaacagcattggcttttaaagatgaactc
aaggccagaaagcgtgttttacgcaggctaggatacatcaccagcgatggtgttgtggag
ttgaaagggaaggttgcatgtgaaatcagcagtgcagaagagttgacactaacggagcta
atgttcagtggtgtcttcaaggaagcgaaggtggaggagttggtttctctcctctcttgc
tttgtgtggcgagagaggctccctgacgcagccaaacccagagaagaactcgacttgctc
ttcatacagttacaagacacagccaggcgtgtcgctgaagttcagctcgactgcaaggtg
gacatcgatgtggagagttttgtgcactcgttcagaccggatataatggaggcggtgtat
gcatgggcaaaagggtccaagttttatgagatcatggagatagctcgtgttttcgaaggg
agtttgatcagagcgataaggagaatggaggaagttctgcaacagctcatagtggctgca
aaatctattggcgaaacacagcttgaagctaaactagaagaagctgtttccaagattaag
agagacattgttttcgcagcatctctctacttgtga
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