Brassica rapa (field mustard): 103839525
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Entry
103839525 CDS
T03449
Name
(RefSeq) protein transport protein SEC16A homolog isoform X1
KO
K20353
COPII coat assembly protein SEC16
Organism
brp
Brassica rapa (field mustard)
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
brp04131
]
103839525
Membrane trafficking [BR:
brp04131
]
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Coat protein complex II (COP-II)
103839525
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Sec16
Sec16
Motif
Other DBs
NCBI-GeneID:
103839525
NCBI-ProteinID:
XP_009114277
UniProt:
M4DLV4
LinkDB
All DBs
Position
A09:15056211..15062758
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AA seq
1364 aa
AA seq
DB search
MASNSQFLLDDQTDEDFFDKLVDDSYSPSQAHAAKELEFVDDGSDSEDAKAFANLSLREE
AGNDDAVEGPSSEPSSSVPVQFHVINEGPSSEPSSIALEEADANKLSGDLVVRSEVEDKP
LSEAVKESNGSGSPGVKEVDWGSFCADSSVNDGGGFGSYSDFFTQLDGSSTGNLQGKAEI
DAGKLVSDDTQIASFGFDSSAGLGQQQGEVSQDSTSEQYVDNSQAWENSYPGWKYDASTG
QWYQVDSHDDASMNAQESYINSASNWQSKVASTDNSNVAYLSQSTTSAVAESMSTWNQVS
QVANGYPEHMVFDPQYPGWYYDTIAQEWRSLDSYNQASQTTVTGQAHEQQAQNGQIGAMF
HNNTESSMYNINDKSQAFKPQEYGIQNQQGSWDQSYYANNQQQATNTWQSENGGDNEASV
TSVSFSHFGGNQQVNSLYCTESVAEQFKPKENRAQGFIPQHMNVASVPQHGPLSFSNDFY
NRQKSVDDTQQSYQSNQLFSPSVGRSPDGRPPHALVSFGFGGKLILMKDTNASLQNSSFG
SQGAGGSSISVLNLAEVTSGSASFSSLGEDSSSYFRSLHQQCLPGPLVGGSVGNKDLIKW
LDERILQCESSDIDFSRGKFLKMLMSLLRISCQYYGKLRSPFGADTTQKETDSVEAAVAK
LFAIAKKNGGYAPLSQCLQHLPPESQMQVTASEVQNLLAFGRKMEALQCAQEGHLWGLAL
VIAAQLGDQFYADTVKQMALRQLVPGSPLRTLCLLVAGQPAEVFSNGSTSCVDFSGSVSA
SQHQTQFGSSSMLDNWEENLGIITANRTTDDELVITHLGDCMWKERSEIIAAHICYLLAD
KNFDPYSDSARLCLVGADHWKYPRTYASPEAIQRTELYEYSKTLGNSQYILLPFQPYKII
YAHMLAEVGKLSAAQKYCQAVSKCLKTGRSTEVETWKQFVSSLEERIRIHQQGGYTVNSS
PAKIVGKFLNFIDSTAHRVVGGMPPSALHSTAGNLQANEYQHQQQEAAKLPYSQSANTMQ
SLMSHASMEPIRELDGNSRTMAVHSRSVSEPDFGRTPIQDQPVSSKDKATDGVPQVKPTV
NVTSSRFSSFGFGILKNTVRRVLPSRPSKEAKLGEENQFYYDEKLKRWMEKGVEPPAEEA
ALPPPPTVGTYQNNAMGYANRSDMMNEMSPPSGSWSSGSPTPSENSSGIPPISQGSNQFS
ARGRPRYVDLFNPGGGNSKTMFQSPPAKSAKPPIPAKANFFIPAAPASSSNDQVTEMAAT
ETSQEYSAEEVAVPPPPPSHSSFQSPTPSPMTMQRFPSLDNIKRSGSGTSLNDDFPSSGS
RRTASWSGSLNSSFTSPTGPSNLKPSPLNGSSSSLGEELQDVEL
NT seq
4095 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaaattctcagtttctgctggacgatcaaacggatgaggatttcttcgacaag
cttgttgatgattcctattcacccagccaagctcacgctgccaaggagctcgaattcgtc
gacgacgggagcgactccgaagacgccaaagcttttgcgaatctctctcttcgtgaagaa
gcagggaacgatgatgcagtcgagggtcctagtagtgagccttcttcatccgttcctgtc
caattccatgttataaacgagggtccaagtagtgagccttcatccattgctctcgaagaa
gctgatgcgaataagttaagtggtgatttggtggtgagatcggaggtggaggataagccg
ttatctgaagcggtaaaagaaagcaatggatctgggagtcctggggttaaggaggttgat
tggggctccttttgtgctgattcatctgtcaatgatggcggcgggtttggttcatactct
gacttcttcacccagttggatggatcttctacaggaaatttacagggaaaagcggagata
gatgcggggaaattagtatccgatgatacacagatcgcaagttttggttttgatagttcg
gcaggtttggggcaacagcagggtgaagtgagtcaagattctacaagtgagcagtacgtt
gataacagccaagcttgggaaaatagctatcctggatggaaatatgatgctagtactggc
cagtggtatcaagttgatagccatgatgatgcaagtatgaatgcacaggagagctatata
aactcagcgagtaactggcaaagcaaagttgcctctactgataactccaatgttgcttat
ctgagtcagagtacaacatctgcagtggctgagagtatgtctacttggaaccaggtttca
caggtggcaaatggatatcctgaacacatggtctttgacccacagtatccggggtggtac
tatgacacaattgctcaagaatggcgctctctggacagctacaaccaggcttctcagaca
actgtaactggtcaagctcatgaacagcaagctcagaacggccagattggggctatgttt
cacaataataccgagagtagcatgtataatatcaatgataaaagccaggcattcaaaccg
caagaatatggtatacagaaccaacaaggaagttgggaccaatcttactatgccaacaat
cagcagcaggctacaaacacatggcagtcagaaaatggaggtgacaatgaggcgtctgta
acttctgtctcattttcacacttcggaggaaaccagcaagtaaatagtttgtactgtacg
gaatctgtggctgaacagtttaagccaaaagagaatagagctcaaggcttcatccctcag
catatgaatgtggctagtgtcccgcagcatggaccactgagtttctcaaacgatttctat
aatagacagaaatctgtagatgatactcaacagtcatatcagagcaatcagcttttctcc
ccaagtgtaggaagatcacctgatgggcgtccaccacatgcacttgtgagttttggcttt
ggtgggaagctcattcttatgaaggatactaacgcctctctccagaattcatcattcgga
agtcagggggctgggggaagctctatatctgtcctaaacttggcggaagttacttctggg
agtgcttctttttcaagtcttggggaagactcttcgagttattttcgttctctgcatcaa
caatgtcttccaggtcccttggttggaggaagtgttggaaataaagacttaattaagtgg
cttgatgagagaattttacagtgtgaatcttctgacatagacttttcaagagggaagttt
ttaaaaatgcttatgtctttgctcagaatatcttgtcagtattatgggaaactccggtct
cctttcggggctgatacaacgcaaaaggaaacagattctgttgaagcagcagtagcaaaa
ctttttgcaattgccaagaaaaatggtggctatgctccattaagccaatgcttgcagcat
ttacctcccgaatcacaaatgcaagtaacagcttcagaggtgcagaatcttctggctttt
ggtaggaaaatggaggctctgcaatgtgcacaagaaggccatttatggggactagcgctt
gttatcgcggcacagcttggagatcagttctatgctgatactgtgaaacaaatggccctt
cgccagctggtgcctggatcacctttgcgaacattgtgcttgctggttgcggggcaacca
gctgaagtgttctccaatggcagtacaagctgtgtcgatttttctggttccgtaagtgcg
tctcagcaccaaacccagtttggaagtagtagcatgcttgataactgggaagagaatttg
ggtataataactgccaacagaaccacagatgatgagcttgtgattactcatcttggagat
tgcatgtggaaagaaaggagcgagataattgcagcgcatatttgctatttacttgcggat
aagaactttgatccatactcagatagtgccaggctctgccttgtcggagcagatcattgg
aaatatccgagaacctatgcaagtccggaggctatacagagaacagagttatacgagtac
tctaagacgctgggaaactctcagtatatcctgttaccgtttcaaccatataaaatcata
tatgcccatatgctggctgaagttggtaaactttcggccgcacaaaagtactgtcaagca
gtatcgaagtgcctcaagactggccgatcaactgaagtagaaacatggaaacaatttgtt
tcatcactggaagagagaatccgtatccaccaacagggcgggtatactgtgaattcttcc
ccagcaaaaattgtcggaaaatttcttaactttattgatagtacagcacatcgtgttgtt
gggggcatgccaccatctgcacttcattcaacagcaggaaacttacaggcaaatgagtat
cagcatcaacagcaggaggctgctaagttaccatatagtcaatctgctaatacaatgcaa
tcattgatgtcacatgcctcaatggaaccaatacgtgagttggatgggaactcaaggacg
atggcagtacattctagaagtgtctcagagccagatttcggtaggacgccaatacaggat
cagcctgtctcctcaaaagacaaagctactgatggggtgccacaggtgaaaccaaccgtg
aatgtgacaagttcgcggtttagcagctttggttttggcatactgaagaacaccgtacgg
agggtcttaccatctcggccatctaaagaggcaaaactgggtgaggagaatcagttttac
tatgacgaaaaactaaagagatggatggagaaaggtgtagaacccccagctgaggaagct
gcattgcctcctcctccaacagtaggcacgtaccaaaacaacgcaatgggttatgcaaac
agatctgacatgatgaacgagatgtctccacctagtgggagctggagcagtggcagcccg
actccatccgagaattcttcgggaatcccaccaatctcacagggctcgaatcaattctca
gctcgtggacgcccaagatacgttgacctctttaatccaggcggtggaaactctaagaca
atgttccagtcacctcctgcaaaatctgctaaaccaccaatccctgcaaaagcaaatttc
ttcatcccagcagcacctgcgtcgtcttcaaacgaccaggtaaccgagatggcagctact
gaaaccagtcaggagtactcagcagaagaagtagccgtccctccaccaccaccaagccac
tcttcattccagtccccgactccatctccaatgacaatgcagagatttccaagtctagat
aacatcaaacgaagtggatcaggaacgagtcttaacgatgattttccttcgtcaggttcc
agaagaacagcttcatggagtggaagtttgaacagctcgtttacatctccaacgggtcca
tcaaacctcaaaccaagcccactcaacggtagcagcagcagccttggagaggagcttcaa
gacgtggaactgtaa
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