Brassica rapa (field mustard): 103840839
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Entry
103840839 CDS
T03449
Name
(RefSeq) receptor homology region, transmembrane domain- and RING domain-containing protein 3
KO
K15692
E3 ubiquitin-protein ligase RNF13 [EC:
2.3.2.27
]
Organism
brp
Brassica rapa (field mustard)
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
brp04121
]
103840839
Enzymes [BR:
brp01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
103840839
Ubiquitin system [BR:
brp04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
103840839
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
PA
zf-RING_11
zf-C3HC4
zf-C3HC4_2
zf-RING_UBOX
zf-rbx1
zf-ANAPC11
zf-RING_5
DUF1616
zf-RING_Vps41
Motif
Other DBs
NCBI-GeneID:
103840839
NCBI-ProteinID:
XP_009115614
UniProt:
M4E6X4
LinkDB
All DBs
Position
A09:31496564..31498784
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AA seq
425 aa
AA seq
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MNLVALVLLILHIFILSCVDAGTVVLMNSNITQSFEDMEGYFSPSEEATVETGVLYVADP
LDACQKLRNKPKQSTNGTFPFALIVKGGCSFEHKVRNAQGTGFKAAIVHDDVDRDFLLAM
EGEEYGINIQAVFVTKAAGETLKKYAGMAETRVMLVPSLEDSGLSLLATTALVVSLGMFV
VLTTCIYICRRCTSPITSQFHGMSSRTVKAMPSATFTSVRGYTTTALSCAICLEDYSVGE
KLRVLPCCHKFHATCVDVWLTSWRTFCPVCKQDARISTDEPSASESTPLLAGSSLVHIDP
PPVGSSLLPTTSSYSQLSFRSSPSHESWPSPINVSHISADFRQQAASPLRSSSQRSYIAC
IGSLDSPFYSNIASLNEMMLPYQTSPSNASPGFVQSIRHQFNSSLSRESEGSSSHFASAH
SPEEC
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgttgctctggtcctcctgatattacacattttcattctttcatgtgtagat
gcaggcacagtcgttttgatgaattccaacatcactcagtctttcgaagacatggaaggt
tatttctctccatcagaagaggctaccgtagaaaccggagtcctttacgtggctgatcct
ctcgacgcatgccaaaagttgaggaataaaccgaagcagagcactaacggtactttccct
ttcgcgttgatcgtgaaaggaggctgcagttttgagcacaaagtcagaaacgctcaggga
accggtttcaaagctgccattgtccatgacgatgtggaccgtgacttcttattagctatg
gaaggagaggagtacggtatcaacattcaagcggtttttgtgacgaaagcagcaggagaa
acactcaagaaatacgctggcatggcggaaacaagagtcatgctggtccctagtttagag
gactcggggttgtcgttgttagcgaccacagcattggttgtatcgttgggcatgttcgtt
gttctgaccacttgtatttacatctgtagacgttgtacatcacctataacatcccagttc
catggaatgagcagtagaacggtaaaagcaatgccgagtgctacattcacttctgtgcgc
ggatacaccacaacagctctgtcttgcgctatctgcctcgaagactacagtgttggggag
aagctcagggtcttaccttgctgtcacaagtttcatgccacttgtgtagacgtgtggctt
acatcatggagaacgttttgccctgtgtgtaaacaggatgcaagaataagcacggacgag
ccatcagcttcagagagcacaccgctccttgcaggatcatctttagtgcatatagaccct
cctcctgtgggatcctcacttttgcccacgacctcgtcctacagtcaactatctttcagg
tcttctccctctcatgaaagctggccatcgccaataaatgtcagccatatatctgcggat
ttcaggcaacaagcagcctccccgttgcggtcttcatcgcagagatcatacatcgcctgt
ataggctcgttggactcaccattttactcgaacatagcatctctgaacgagatgatgcta
ccatatcagactagcccaagcaatgcgtcccctgggtttgtccaatcaataaggcatcag
ttcaactcttcgctttccagggaatcagaaggttcatcatctcatttcgcctctgcacac
tcgccggaagaatgttag
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