Brassica rapa (field mustard): 103841672
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Entry
103841672 CDS
T03449
Name
(RefSeq) DNA-directed RNA polymerase I subunit 1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
103841672
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
brp03021
]
103841672
Enzymes [BR:
brp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
103841672
Transcription machinery [BR:
brp03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
103841672
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
Med27
Nop14
Motif
Other DBs
NCBI-GeneID:
103841672
NCBI-ProteinID:
XP_009116470
UniProt:
M4CT03
LinkDB
All DBs
Position
A09:36320057..36328024
Genome browser
AA seq
1640 aa
AA seq
DB search
MAQTTTEGASQVVESVRFSFMTEEDVRKHSVLRVTKPILLDNVGRPVPGGLYDPLMGPME
DDRSKCKTCDQRNLDCPGHCGRIELVRPIYHPLLFNLLFIFLQRTCFFCHHFMVKKEVVA
RCVSQLKLIMKGDVIAAKQLSLKPTDSSPEECEDSDMGKQRWTSLQFAEATDVINQFLRL
KSRKCESCKAKPPKLEKPIFGWVRLDGMSAIDIGANVLRGVKAKKSANNGEDSDDGDESG
ISGLHEVEDGAKNKKGKSSKAAKDYGDLKKASKRDLLPIEVKEILEGLWDNEYEFCSFIG
DLWQSGSEKRDYSMFFLKSVLVPPTKFRAPTKGGDSVTEHAHTAGLNKVLEANIALGNAC
TNKLGLSKIVSIWMNLQETVNVLFDSKTATVKSQREGTGICQLLEKKEGLFRQKMMGKRV
NHACRSVISPDPFIAVNDIGIPPCFALKLSYPERVTPWNVEKLRQAIINGPDVHPGATHY
SDKVSTMKLPPTKKARIAIARKLLSSRGVNTELGKTCDVNFECKTVYRHMQDGDVVLVNR
QPTLHKPSIMAHIVRVLKGEKTLRLHYANCSTYNADFDGDEMNVHFPQDEISRSEAYNIV
NANNQYARPSNGDPLRALIQDHIVSSVLLTKGDTFLDKEEFNQLLFSSGVTDMVLSSFSG
RSGKKVTQSASNAMLLTVTPAILKPVPLWTGKQVITAVLNEITKGHPPFSVEKSTKLPVD
FFKCRTREAKSKSGESSKKSKKNNFNEDKLLIRKNEFVRGVIDKAQFADYGLVHTVHELY
GPNAAGNLLSVFSRLFTVFLQTQGFTCGVDDLIILKDVDEKRTEQLRECEGVGEKVLRKT
FGVDVNAQIDPQDMKSRIERVLYEDGELALASLDRSVVSELNQCSGKGVMNDLLSDGLLK
TPGTNCISLMTISGAKGSKVNFQQISSHLGQQDLEGKRVPRMVSGKTLPCFHPWDWSPRA
GGFISDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLESLKVNYDCTV
RDADGSIIQFQYGEDGVDVHRSSFIEKFQEMTLNQDMFLERCTEDMLSGSSSYITDLPIT
LKKGAEKFVEAMPMKERIASKMVRQEDLLKLVKSKFFASLAQPGEPVGVLAAQSVGEPST
QMTLNTFHLAGRGEMNVTLGIPRLQEILMTAAADIKTPIMTCPLLKGKTNDDASQITDKL
RKITVADIIKSMEVSVIPFAVHGGEVCSIHKLKINLYKPEHYPKHTDITEEDWEETMTVT
FLRKLEDAIETHMKMLLRIRGIKIEKDNGPKSGNETDNDDSDSGKKAGGDDDDDDDEGED
TEADDLGADEQKRKKQATDEQDYEESDDDEKNEPSSVSGVVDPEMDDDEDEDGEVSKEET
PEEDTLEAKKEVKSVQQESKKKKRQRFVSGEKDRHIFAEGKGKTFEVHFKFHKNEPHILL
AQVAQKTAQKVYVQNLGKIERCTVANCGDPQVIYYGDNPKERAEISNEEKKASPALHASG
VDFAGLWEFQDKLDVRYLYSNSIHDMLNTFGVEAARETIIREINHVFKSYGISVSIRHLN
LIADYMTFSGGYRPMSRMGGIAESTSPFCRMTFETATKFIVQAATYGEVDRLETPSARIC
LGLPALTGTGCFDLLQRMDL
NT seq
4923 nt
NT seq
+upstream
nt +downstream
nt
atggctcaaaccaccacagagggagcttcccaagtggttgagtccgttaggtttagcttc
atgacagaggaagatgtccgaaagcacagtgttcttcgagttacaaaacccatcttgctc
gataacgttgggagacctgtccctggtggtctctatgatcctcttatgggtccaatggag
gatgatagatcaaagtgtaaaacgtgtgatcagcgcaatttagattgtccaggacattgt
gggcgtatcgagcttgtccgtcctatctaccaccctttgctgttcaatctccttttcata
tttttgcagaggacatgtttcttctgtcatcactttatggttaaaaaggaagtggttgca
agatgcgtctctcagctgaaacttatcatgaaaggtgatgtgattgccgctaagcagctc
tctcttaaacccactgattcatcaccagaagaatgtgaagactccgacatgggaaagcag
aggtggacatctcttcagttcgctgaagccactgacgtcatcaatcagtttcttaggttg
aagtcaaggaagtgtgagtcttgcaaagcaaagcctcctaaactagagaagcctattttc
ggatgggttcgcttggatggtatgtcagcgatagatattggagctaatgtactgcgaggg
gttaaggctaagaagtcggctaacaatggggaagattccgatgacggtgatgagagtggt
atcagtggattacatgaagttgaagatggtgctaaaaataaaaaaggaaagtcttcgaaa
gcagctaaagactatggagatctcaagaaggcttctaaaagagaccttttgccgattgag
gtcaaggaaatcttagaaggtttgtgggataatgagtatgagttttgctccttcattggt
gatctttggcagagtggatctgaaaaaagggactattctatgttctttttgaagagtgtt
cttgtgcctcctactaaatttagagctccaacaaaaggaggtgacagcgttacggaacat
gctcacaccgcagggctaaataaggtcttggaagccaatatagcccttggaaatgcctgt
actaacaaattaggtctatccaagatagtttccatatggatgaatcttcaagaaacagtc
aatgtcttgtttgatagcaagactgccacagttaaaagccagagagagggtactggaata
tgtcaactgctggagaagaaagagggtctgtttcggcaaaagatgatgggaaagagagtg
aatcatgcatgcagatctgtgatatctccagatccttttatcgctgtcaatgacattgga
attcctccttgctttgctttgaaattgagttatcctgagagggtgactccttggaatgtt
gaaaagttaaggcaggctatcattaatggtcctgacgttcacccgggagctacacattac
tctgacaaagtatctacaatgaagctgcctcctaccaaaaaagcacgaatagcaattgca
agaaagctattgtcctcacgaggagtcaatacagaacttgggaaaacttgtgatgtcaac
tttgaatgtaaaactgtctatcggcatatgcaagatggtgacgtcgtccttgtcaatcgt
cagccaacattacataaacctagtattatggctcacattgtccgtgttctcaagggggag
aaaacacttcgtctccactatgcaaattgcagtacatacaatgcagatttcgatggggat
gagatgaatgtccattttccacaagatgagatttcacgatctgaggcttacaatattgtc
aatgccaacaaccaatatgccaggccttctaatggtgatccacttcgagctttaattcag
gaccacattgttagttcggttttacttaccaaaggggacacctttttggacaaagaagaa
ttcaatcagcttctcttcagttccggcgtgactgacatggtactcagttctttttctgga
cgttctggcaagaaagtaacacaatcagcttctaatgcaatgctgttgactgttacgcct
gccattttgaaaccagtacctctttggacaggaaagcaggtcatcacggcagtgttaaat
gagataaccaaaggtcatcccccattcagcgtagagaaatctacaaaacttccggttgac
ttcttcaaatgtagaacaagagaagcaaaatctaaaagtggagaatccagcaaaaagagc
aagaagaataattttaatgaagataaactgctcatcagaaaaaatgaatttgtccgcggt
gtgattgacaaggctcagtttgcggactatggattggttcatacagtgcatgagctctat
ggtccaaatgctgcaggaaacctactttctgtttttagtcgtctcttcacagtcttcctt
cagactcaaggtttcacctgtggagttgatgatcttattattttgaaagatgtggatgaa
aagaggacggagcaacttcgagaatgtgaaggagttggtgaaaaagtactccgtaagacc
tttggcgttgatgttaatgctcagatagatcctcaggacatgaaatccagaattgagcga
gttctgtatgaggatggcgaacttgctttagcatctttggacaggagcgtcgtaagtgag
ctcaaccagtgttcaggcaagggggtgatgaacgatttgctctcggatgggttgttgaaa
acacctggaacgaattgtatctctctgatgacaatatctggggctaagggtagtaaggtt
aacttccagcaaatttcttctcaccttggccagcaagatttagaaggaaaaagagttccc
cgaatggtttcggggaagacactaccttgcttccatccatgggattggtcacctagagct
ggaggttttattagtgacagattccttagcggtctccgcccccaagaatactactttcat
tgtatggctggacgagaagggttagttgatactgctgtgaagacatcacgtagtgggtat
ctacagagatgtttgatgaaaaatcttgagagcctgaaagtcaactatgattgtacagta
cgggatgctgatgggtccatcattcagttccaatatggtgaagatggcgtggatgttcat
cggtctagcttcattgaaaagttccaagaaatgaccttaaatcaagatatgttccttgaa
agatgtaccgaagacatgctatctggatccagtagttacataactgatcttcctattacg
cttaagaagggagctgagaagtttgtagaggcaatgcctatgaaagaacgtattgcttct
aaaatggtgagacaagaagatcttctgaagctagtgaagtcaaaattctttgcaagtctc
gcccagccaggagagcctgtaggtgtacttgctgcacaatctgtaggagagccatcaact
cagatgacgttgaatactttccatcttgctggacgtggagagatgaatgtgacacttggt
attccacgtttacaagagatcttgatgactgctgctgcagacattaagacacccatcatg
acctgcccattgctgaagggcaaaacaaatgatgatgcaagtcaaatcactgataagttg
aggaagattacggtagcagatattatcaagagtatggaagtgtccgtcataccatttgca
gttcatgggggtgaagtttgcagtattcacaagcttaagataaatctctataagccagag
cattatccaaagcacacagatattactgaagaagactgggaagagacaatgacggtcacg
tttctgaggaagctggaagacgctatagagactcacatgaaaatgctcttgagaatcagg
ggcataaagattgagaaagacaacggtccaaaatccggaaacgaaacggataatgatgat
tcagatagtggaaagaaggctggaggcgatgatgacgatgatgatgatgagggagaggat
acagaggctgatgatcttggtgcagatgaacagaaacggaagaagcaagcaacagatgag
caggattatgaggaaagtgatgacgatgagaagaacgaaccatcttcagttagtggagta
gttgaccctgagatggatgatgatgaagatgaggacggagaagttagcaaggaagagacc
ccggaggaagataccttggaagcgaagaaagaggtgaagagtgttcaacaagagagtaaa
aaaaagaagagacaaagatttgtcagtggtgaaaaagacagacacatctttgctgaaggc
aaaggaaagacatttgaggtccatttcaagtttcataaaaatgagcctcatatattactt
gctcaggttgctcagaagacagcacagaaagtttacgtccaaaaccttgggaagatcgaa
cggtgcacggtagctaactgtggtgatcctcaagtgatatactacggagacaacccaaag
gagagagcagagatctccaacgaggaaaagaaagcctcaccagctctccacgcatcagga
gtagattttgccggtctctgggagtttcaagacaagcttgacgtcaggtacttgtacagc
aacagcattcacgacatgctcaacacttttggagttgaagcagcgagagagacgatcatc
agggaaattaaccacgttttcaaatcgtacggtatctcagttagcatcagacacttgaac
ctcatcgcggattacatgacgttctctggtgggtaccgtccaatgagccgtatgggagga
attgcagagtcaacttctccgttctgcagaatgacgtttgaaacagccactaagtttatt
gttcaagcagctacttatggagaagtggacaggctagagactccctcagctagaatatgt
cttggcttgcccgctcttacgggaactggttgctttgacttgttgcagagaatggacctc
tga
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integrated database retrieval system
