Brassica rapa (field mustard): 103841733
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Entry
103841733 CDS
T03449
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 2
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103841733
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brp03019
]
103841733
Enzymes [BR:
brp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
103841733
Messenger RNA biogenesis [BR:
brp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
103841733
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
103841733
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
zf-C6H2
IG_AIR9
Motif
Other DBs
NCBI-GeneID:
103841733
NCBI-ProteinID:
XP_009116536
UniProt:
M4CT61
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All DBs
Position
A09:complement(36632346..36635678)
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AA seq
597 aa
AA seq
DB search
MLSVIRVHLPSEIPIVGCELTPYVLVRRPDKSAATEDVPESSPLEGYFLRYRWFRVQSDK
KVTICSVHPTEQATLQCVFCSKRPALVSKSYHCSPKCFTDAWQHHKTLHERAAAENGNNE
EDNNNDLSRANSAASGVLASTLSSLNGPPTPFYPSSIAQKNGGETLVEVGGCKTYTPTAD
DIGYVLKFECVVAVAESKQSVGHPSTIMTSRVIPAPSPRPRRLIPVNGADVVGGHLDQDG
RIQSAGSFTVLSYNILSDTSASSELYSYCPTWALSWPYRRQNLLREIVAYRADVVCLQEV
QSDHFHEIFAPELDKHGYQALYKRKTNEVLSGSTSAIDGCATFFRRDRFAHVKKYDVEFN
KAAQSLTEAIIPPAQKRSALNRLVKDNIALIVVLEAKFGNHQPTDGKRQLICVANTHVNV
QQELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNTLPGSAPHSLLVYGKVDPQHPDL
LVDPLGILRPQTKLTHQLPLVSAYSSFVRSVMGIGLEQHRRKMDLNTNEPLFTNCTRDFI
GTHDYIFYTADTLMVESLLELLDEDGLRKDTALPSPEWSSSHIALLAEFRCMPRTRR
NT seq
1794 nt
NT seq
+upstream
nt +downstream
nt
atgcttagcgtgatccgagttcacctcccttccgaaattcccatcgtgggctgcgagcta
accccttacgtcctcgtccgccgccccgataagtccgccgccaccgaagatgtccctgag
tcttcccccctcgaaggctacttcctccgttacagatggtttcgtgtacagagcgataag
aaagtaacgatctgcagcgtccatccaacggagcaagccactttgcaatgcgtcttctgc
tcgaagcgtccagctctcgtctccaaaagctaccactgctctcccaaatgcttcaccgac
gcgtggcagcaccacaagactctgcacgagcgtgcagccgctgagaacgggaacaacgaa
gaagataataataatgacttgtcacgtgccaacagtgctgcctctggggtcctcgccagc
accttgtcgagtctcaacgggccaccgacgccgttttatccttctagcatcgcgcagaag
aacggaggagagacgctggtcgaggtcgggggttgcaagacgtacaccccgacggctgat
gatattggatacgtgttgaagttcgagtgtgtggtggctgttgctgagagtaagcagtct
gtggggcatcctagtacgattatgacttcgcgtgtgattcctgctccttctccgaggcca
cggaggctgatccctgttaatggagctgatgtggtgggtggtcacttggatcaagatggt
cggattcagtctgcagggtcgttcactgttctttcttacaatatattgtctgatacttct
gcgagtagcgagctttatagctattgtcctacttgggctctttcttggccgtatagaagg
cagaatttgttgagggagattgttgcttatcgagctgatgttgtctgccttcaagaggta
caaagtgatcatttccatgaaatttttgctccggagttggataagcatgggtatcaagct
ctttacaagaggaagactaatgaggttctcagcggaagtacaagtgcaattgatggatgt
gcgacatttttcagaagggatagatttgcacatgtcaagaaatatgatgttgaattcaat
aaggctgctcagtctttgactgaggctatcatccctcctgctcagaagagaagtgcttta
aaccgacttgtgaaggataacattgcgttgatagttgttcttgaagcgaagtttggtaat
catcaacctactgatgggaagcgccagcttatctgtgtggcaaacacacatgttaatgtt
caacaagaactgaaggatgtgaagctctggcaggttcatactttattaaagggactggag
aaaatagctgctagtgctgatattcctatgcttgtatgtggagacttcaatactcttccc
ggaagtgctcctcattcacttcttgtatatggaaaggttgatccacaacatccagatctg
ttggttgatccccttgggatcctgcgtcctcaaaccaaactgactcatcaactgcctctg
gtgagtgcgtactcatcgtttgtgagatcagtaatgggtattggattggaacaacacaga
aggaaaatggatcttaatacaaacgagcctttgtttaccaattgcacaagggacttcatt
ggcactcatgactatatattttatacagcggatacgttaatggtggagtctttattggag
ttgctagatgaagatggattgagaaaggatacagctcttccttccccggaatggtcttct
agtcacattgcactcttagctgagtttcgatgcatgcctaggaccagacgctaa
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