Brassica rapa (field mustard): 103842049
Help
Entry
103842049 CDS
T03449
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103842049
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
brp03041
]
103842049
03009 Ribosome biogenesis [BR:
brp03009
]
103842049
Enzymes [BR:
brp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103842049
Spliceosome [BR:
brp03041
]
Complex A
U2 snRNP components
U2 related factors
103842049
Complex B
103842049
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
103842049
Ribosome biogenesis [BR:
brp03009
]
Eukaryotic type
90S particles
Helicases
103842049
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
ResIII
ABC_tran
nSTAND3
SRP54
T2SSE
Flavi_DEAD
AAA_7
AAA_30
PhoH
TsaE
NACHT
UvrD-helicase
Motif
Other DBs
NCBI-GeneID:
103842049
NCBI-ProteinID:
XP_009116902
UniProt:
A0A3P5Y6L8
LinkDB
All DBs
Position
A09:complement(37968105..37971334)
Genome browser
AA seq
718 aa
AA seq
DB search
MGTERKRKVSLFDVMDNPSAPKVAKFNGLVDCGMNKWNGKPYSAKYYEILEKRRTLPVWL
QKEEFLKTLKDNQTIILVGETGSGKTTQIPQFVIDAVDAESSDRKWLVACTQPRRVAAMS
VSRRVADEMDVAIGEEVGYSIRFEDCSSPRTVLKYLTDGMLLREAMADPLLERYKVIILD
EAHERTLATDVLFGLLKEVLRNRPDLKLVVMSATLEAEKFQEYFSGAPLMKVPGRLHPVE
IFYTQEPERDYLEAAIRTVVQIHMCEPPGDILVFLTGEEEIEDACRKINKEVGNLGDQVG
PVKVVPLYSTLPPAMQQKIFDAAPEPVTKGGPPGRKIVVSTNIAETSLTIDGIVYVIDPG
FAKQKVYNPRIRVESLLVSPISKASAHQRSGRAGRTRPGKCFRLYTEKSFNNDLQPQTYP
EILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDEGNLTRTGE
IMSEFPLDPQMAKMLIVSPEFNCSNEILSVSAMLSVPNCFLRPREYQKAADEAKAKFGHI
DGDHLTLLNVYHAFKQNNEDPNWCYENYINNRAMKSADNVRQQLVRIMSRFNLKICSTDF
NSRDYYINIRKAMLAGYFMQVAHLERAGSYLTVKDNQVVNLHPSNCLDHKPEWVIYNEYV
LTTRNYIRTVTDIRGEWLVDVAPHYYDLTNFPNCEAKRVLEKLYKKREREKADSKNRK
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgggtaccgagagaaagaggaaagtcagcttattcgatgtcatggacaatccatcagct
ccgaaggtcgccaaattcaatggtctcgttgactgtgggatgaacaaatggaacggcaag
ccgtattcagctaaatactacgagattctcgagaaacggaggactctgccagtgtggttg
cagaaagaggagtttctcaaaacgttaaaagacaatcaaacgataattcttgttggagag
actggtagtggtaaaaccactcagattccacagtttgttattgatgctgtggatgctgag
agttcggataggaagtggttggttgcttgcacacagcctcgtagagttgcagccatgtct
gtctcccgccgtgttgctgatgagatggatgttgctattggagaagaagttggttacagc
attcgtttcgaggactgtagcagccccagaacggtcctcaagtacttgactgatggtatg
ctactgagagaagcaatggcggacccgcttctagagagatacaaagttattattctcgac
gaggctcacgagaggactctcgccacggatgtgctctttggtcttctgaaagaggtgttg
aggaatagacctgatctcaagctggttgtcatgagtgcaactctggaagccgaaaagttt
caggagtattttagcggcgcgcctctgatgaaggttcccggtaggcttcaccccgtggag
atcttctacactcaggagcctgagagagactacctcgaggctgctattaggactgttgtc
cagatacacatgtgcgagcctcctggtgatattcttgtcttcttaaccggagaggaggag
atcgaagacgcatgccgcaagatcaacaaagaggtcggtaatctcggggatcaagtgggg
cctgtcaaggtcgtgccactgtactccactctcccaccagcgatgcagcagaagatattc
gatgctgctcctgagcctgtgacaaaaggtggtcctcctgggagaaagattgttgtgtcg
actaacattgccgagacttccttaactattgatgggattgtctacgtcattgaccctggc
ttcgctaagcagaaagtctacaacccgcgtatccgtgttgagtcgttgcttgtgtctccg
atatcaaaggcgagcgctcaccagagatcaggtcgtgccggtagaacacggcccggaaag
tgtttcaggctttacacggagaagagtttcaacaatgacttgcagccgcagacgtatcct
gagatattgagatcgaaccttgcgaacacggtgctgacactgaagaaactggggatagac
gacttggtgcactttgattttatggacccccctgcgcctgagacactgatgcgagccttg
gaggttttgaattatttgggagcgctggatgatgaaggaaacttgacgaggacgggtgag
ataatgagcgagttccccttggatccacagatggcgaagatgctcatagtgagtcctgag
ttcaactgctcaaacgagatcctctccgtttcagcaatgctatcagtacccaattgcttt
ctacggcctagagagtatcaaaaagcagcagatgaagctaaagccaagtttggacacatt
gatggagatcacctcacgttgctaaacgtctaccatgcttttaagcaaaacaatgaagat
ccgaactggtgctacgagaactacatcaacaacagggcaatgaagtctgcggacaatgtt
agacagcagcttgtgaggataatgtcaaggttcaatctgaagatttgcagcactgatttc
aacagccgcgactactacatcaacataagaaaggccatgcttgctggttatttcatgcaa
gtggctcacctagaacgtgctgggagttacttgaccgtcaaagataaccaagtggttaat
ttgcatccatccaattgcttggatcacaaaccggagtgggttatctacaacgagtatgtt
ttgactaccaggaactacatcagaactgtgacggacattcgcggtgaatggctagtagac
gttgctcctcactattacgatcttaccaacttccccaactgtgaggcgaaacgtgtcctc
gagaagctttataagaagagagagagggagaaggcagacagcaagaaccgcaagtga
DBGET
integrated database retrieval system
