Brassica rapa (field mustard): 103842104
Help
Entry
103842104 CDS
T03449
Name
(RefSeq) protein TRANSPORT INHIBITOR RESPONSE 1
KO
K14485
transport inhibitor response 1
Organism
brp
Brassica rapa (field mustard)
Pathway
brp04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
103842104
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
brp04121
]
103842104
Ubiquitin system [BR:
brp04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
103842104
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Transp_inhibit
F-box_5
LRR_At5g56370
F-box-like
LRR_4
F-box
LRR_NXF1-5
LRR_At1g61320_AtMIF1
Motif
Other DBs
NCBI-GeneID:
103842104
NCBI-ProteinID:
XP_009116967
UniProt:
M4CU26
LinkDB
All DBs
Position
A09:complement(38187796..38190723)
Genome browser
AA seq
595 aa
AA seq
DB search
MYKRVALSFPEEVLEHVFSFIHVDKDRNSVSLVCKSWYEIERWCRRRVFIGNCYAVSPAA
VIRRFPKARSVELKGKPHFADFNLVPEGWGGYVYPWIEAMSASYTWLEEIRLKRMVVSDE
CLELIAKSFKNFKVLVLSSCDGFSTDGLAAIASSCRNLKELDLRESDVDDVSGHWLSHFP
DTYTSLVSLNISCLVSEVSFSALERLVCRSPNLKSLKLNRAVPLEKLAALLQRAPQLEEF
GTGVYSAEVRPDVLSGLSVAISGCKKLKWLSGFWDALPAYLPAVYSVCSGLTTLNLSYAT
VQSYDLVKLLSQCPKLQRLWVLDYIEDDGLEMLALTCKDLRELRVFPSEPFVMEPNVALT
EQGLVSVSAGCPKLESVLYFCRQMTNAALVTIARNRPNMTRFRLCIIEPKAPDHLTLEPL
DVGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGC
ESLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDE
RGPPDSRPESCPVERVFIYRTVAGPRFDMPGFVWNMDQQHSATRFSRQIITTNGL
NT seq
1788 nt
NT seq
+upstream
nt +downstream
nt
atgtataagcgagtggccttatcgttccccgaggaagtcctcgagcacgtgttctccttc
atccacgtggacaaggacaggaactcggtatccctggtgtgcaagtcgtggtacgagatc
gagcggtggtgcaggaggagagtcttcatcgggaactgctacgccgtgagccccgcggcg
gtgattcggaggttccctaaggcgagatccgtggagctgaaggggaagccgcacttcgcg
gacttcaatctggtgcccgaggggtggggagggtacgtgtacccgtggatagaggcgatg
tcggcgtcgtacacgtggctggaggagataaggctgaagaggatggtggtgagcgacgag
tgcttggagcttatagccaagtcgtttaagaattttaaagtgctcgtgctttcctcgtgc
gatggattctccacggatgggctcgctgctatcgcttcgagctgcaggaatctgaaagag
cttgatttgcgtgagagtgatgttgacgacgttagcggacactggcttagccatttccct
gatacatacacttctttggtttcgctcaatatctcatgcttagtctccgaggtcagtttc
tctgctctggagcggctggtgtgtaggtctcccaacctcaaatcactgaagcttaaccga
gctgttcctcttgagaagttggctgctttacttcaaagagctcctcagctggaggaattt
ggcactggtgtgtacagtgctgaagtgcgtccggatgtgctctctggtttgtctgtagct
atctctgggtgcaagaaattgaagtggttatctgggttttgggatgctcttcctgcgtat
cttcctgcagtttattcggtttgcagtggacttacaactttgaacttgagttatgcaaca
gtccagagctatgatcttgtcaagcttcttagtcaatgtcctaaattgcagcgcctctgg
gtgttggactacatcgaggatgatggtcttgaaatgcttgctttgacctgcaaggacctt
cgagagctgagggtgtttccgtctgagccttttgtgatggagccgaacgttgcgttgaca
gaacaagggcttgtctccgtctccgcaggctgtccaaaactcgagtcggttctctacttc
tgccgtcaaatgaccaatgctgcgctggtaaccattgctaggaaccgtcccaacatgacc
cgcttccgtttgtgcatcattgagccgaaagcccctgaccatctgactctagagccactg
gatgtgggatttggagccatagtggagcactgtaaagatctccggcggctctccctatca
gggctgttgaccgacaaggttttcgaatacattgggacgtatgcaaagaagatggaaatg
ctgtcagtggcgtttgcaggagacagtgacttggggatgcatcatgttctgtcagggtgc
gagagcttgaggaaactagagataagggactgcccctttggagacaaggcgcttttggca
aatgcttcgaagctggagacaatgcgatctctttggatgtcttcgtgttccgtgagtttt
ggagcctgcaagttgttaggacagaagatgccaaagctcaatgtggaagtgatcgatgaa
aggggtccgcctgactctagacccgagagctgccctgttgaaagagtgttcatataccga
acagtggctggtcctcggtttgacatgcctggttttgtctggaacatggaccaacaacac
tcagcaacgaggttttccaggcaaatcatcactactaacgggttatag
DBGET
integrated database retrieval system
