KEGG   Brassica rapa (field mustard): 103842135
Entry
103842135         CDS       T03449                                 
Name
(RefSeq) LOW QUALITY PROTEIN: protein transport protein SEC31 homolog B
  KO
K14005  protein transport protein SEC31
Organism
brp  Brassica rapa (field mustard)
Pathway
brp04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:brp00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    103842135
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:brp04131]
    103842135
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:brp02044]
    103842135
Membrane trafficking [BR:brp04131]
 Endoplasmic reticulum (ER) - Golgi transport
  Forward pathways
   Coat protein complex II (COP-II)
    103842135
Secretion system [BR:brp02044]
 Sec (secretion) system
  Eukaryotic Sec-SRP protein
   103842135
SSDB
Motif
Pfam: WD40_CDC20-Fz WD40_Prp19 Beta-prop_TEP1_2nd Beta-prop_RIG_2nd WD40_WDHD1_1st Beta-prop_EML_2 WDR55 WD40 Beta-prop_CAF1B_HIR1 TPR_Sec16 Beta-prop_EIPR1 TPR_GEMI5 Beta-prop_EML MIOS_WD40 Beta-prop_DCAF4 EIF3I SRA1 Beta-prop_WDR90_POC16_2nd Beta-prop_HPS5 Beta-prop_SCAP Beta-prop_WDR19_1st
Other DBs
NCBI-GeneID: 103842135
NCBI-ProteinID: XP_009116998
UniProt: M4CU51
LinkDB
Position
A09:complement(38353675..38360105)
AA seq 1088 aa
MACIKGVGRSASVALAPDAPYMAAGTMAGAVDLSFSSSANLEIFKLDFQSDERELTLVGE
IPSSERFHRLAWGKNGSGSEEFSLGLIAGGLVDGNIDLWNPLSLIGSESALAGHLSVHKG
PVRGLEFNAIAPNLLASGADDGEICIWDLTKPSEPSHFPLLKGSGSATQGEISFISWNRK
VQQILASTSYNGTTAIWDLRKQKPIINFADSVRRRCSVLQWNPDIATQIMVASDDDSSPT
LKLWDMRNTMSPVREFTGHQKGVIAMEWCPSDSSYLLTCAKDNRTICWDTNTAEIVAELP
AGNNWNFDVHWYPKIPGVISASSFDGKIGIYNIEGCSRYGAEENNLSTACLRAPKWYKRP
VGASFGFGGKLVSFHAKAPPKGASSIPSEVFLHSLATEQSLVSRTSEFEAAIENGDKTSL
RGLCGKKSEETESEEEKETWSLLKIMFEEEGTTRTKLISHLGFSLPSVEKDHAVDALSSD
LNGIGLEDTAPEPVKINEAAAFAMDNGEDFFDNFPSKPDTPVSTSSKDFMPPDTDSSAKV
EETQEIPEEEEEGSDKVFDDAIQSALVVGNYNEAVDQCISANKMADALVIAHVGGTSLWE
STREKYLKTSGAPYMKIVSAMVNNDLTSLIYTRSLKFWKETLALLCTFAQGEQWASLCDV
LASKLMAAGNTLAAVFCYICAGNVDRTVEIWSRSLANDRDGRSYAELLQDLMEKTLVLAL
ATGNKKFSASLCKLFESYAEILASQGLLTTAMKYLKVLDSGGLSLELSILRDRISLSAEP
ETNAAASGTQLQSTIPYNQEPTQAQPNVLSNPYDNQYQQPYTDSYVGGYVPQXSHAPMQQ
STMFMPHQAQPAPQPSYPPAPASNAQPSMRTTFVPSTPPALKNADQYQQPFVGFHSFTGP
SNNAYPVPPAPNSYVPPGPSQVGQNLNPMMPQAVAPGAGAIGFTPMSAPGVAPRSXQQAT
PAPAAPPPTVQTADTSNVPAHQKPVIATLTRLFNETSEALGGARANPSKKREIEDNSRKL
GALFVKLNSGDISKNAADKLAQLCHALDSHDFGAALQLQVLLTTSEWDECNFWLSTLKRM
IKARQSMR
NT seq 3267 nt   +upstreamnt  +downstreamnt
atggcttgcatcaagggggtgggcagatccgcctccgtggcgctggctcccgatgctcct
tacatggccgccggtaccatggccggagcggtggacctctcctttagctcttccgctaat
ctcgagatcttcaagctcgatttccagtccgacgagcgcgagttgacgctggtcggggaa
atccccagctcggagcggttccacagactcgcgtgggggaaaaatggatctggatccgag
gaattctcgttgggccttatcgccggcgggcttgtcgatgggaatatagatctgtggaat
cctctctctttaatcggctccgagtccgcactcgctggacatctatcggttcacaaagga
cccgttcgtggtctggagtttaatgcaatcgccccaaatctactcgcctctggggctgat
gatggtgaaatttgcatttgggatttaactaagccttcggagccttctcattttccactt
ctcaagggtagtggttccgccacgcaaggtgaaatctcatttatatcgtggaatagaaaa
gttcaacagatattagcatctacctcctacaatgggactactgcaatatgggacttgagg
aagcagaagcctattattaactttgcagattcagttcgtcgccggtgctctgttttacaa
tggaaccctgacattgctactcagattatggttgcttcagatgacgacagctcacctact
ctcaagctctgggacatgagaaacacaatgtcacctgtgcgcgagtttactggacaccaa
aaaggtgtgattgcaatggagtggtgtccgagtgacagctcatatcttctcacctgtgct
aaggacaaccgaactatttgctgggacactaatacagcagagattgtggctgagttacct
gctggcaacaactggaattttgatgttcattggtacccaaagatacctggagttatatca
gcatcttcatttgacgggaaaattggtatctacaacatcgagggttgcagtcgctatggt
gctgaagagaataatttgagtactgcttgtttaagagcaccaaaatggtataagcgcccg
gttggtgcatcttttggatttgggggaaagcttgtatcgtttcacgcaaaggcccctccg
aagggggcctctagcattccgtctgaggtgtttttgcacagcctggcaactgaacagagt
ttggtgagtcgaacttctgaatttgaagccgccatagaaaatggagataagacttctcta
aggggtttatgtgggaagaaatctgaagagactgaatccgaagaggagaaggagacatgg
agcttgctgaaaatcatgttcgaagaggaaggaacgacaaggacaaagttgatcagccat
cttggctttagtttaccttctgtggaaaaggatcatgcagtagatgcgctctcgtcagat
ctgaatggcattggattagaggatactgcacctgagcctgtgaaaattaacgaggcagct
gcatttgctatggacaatggagaagactttttcgacaactttccttctaaaccggataca
cccgtatctacatcctccaaagattttatgcctcctgacacagattcttctgccaaagtg
gaagaaactcaagaaataccagaagaagaggaagaaggttctgacaaagtatttgatgat
gccatccagagtgctttagttgttggaaattacaatgaagcggtggatcagtgtatatct
gcaaataagatggctgatgctttagttatagctcatgttggtggtacatcattgtgggag
agtactcgtgagaaatatttgaagacgagtggtgcgccttacatgaagattgtttctgcg
atggtgaacaacgatctcacgagccttatttatacaaggtcgcttaagttctggaaagaa
actcttgctcttctctgtacttttgcacaaggagaacaatgggccagcctttgcgatgtc
cttgcctcaaagttgatggctgctggtaacactttggctgcagttttctgctacatatgc
gcaggcaatgttgacagaacagtagaaatttggtcgaggagccttgcaaacgatcgcgat
ggaagatcttatgccgagcttcttcaagatcttatggagaagactcttgtccttgctttg
gcaactggcaacaaaaagttcagcgcatctctatgtaaactatttgagagttatgctgag
atattggccagccaagggcttcttacaacggcaatgaagtacttgaaagttcttgattct
ggtggcttgtcacttgaactttccatattacgtgaccgtatttctctttctgcggagcct
gagactaacgctgcagcttcaggcactcagcttcaaagcaccataccgtataatcaggag
ccaactcaggcgcaaccaaacgttcttagtaacccatatgataatcagtatcagcaacca
tacaccgattcttatgtcggaggatatgttcctcagncttcacatgcgcccatgcagcaa
tcaaccatgtttatgcctcaccaagctcagccagctccgcagccgtcttatcctccggct
cctgcaagcaatgctcagccatccatgagaaccacttttgttccttcaactccccctgca
ctgaagaacgcagaccaatatcagcagccattcgttggttttcattcattcacaggacca
tccaacaatgcataccctgttcccccggctccaaattcatatgtacctcctggcccctca
caagttgggcaaaatcttaacccgatgatgccccaagccgttgctccaggagctggagcc
ataggatttacgcctatgtcagctccaggagttgctccaagatcanaacagcaggcgacc
cctgcccctgcagctccgccaccaactgttcagactgcagatacttccaacgtcccagcc
caccagaaacctgtgatagcaacattgacaaggctattcaatgaaacatcggaagcactg
ggaggcgcacgtgcaaatccttccaaaaagcgtgagatagaagataactcaagaaaatta
ggtgctctgtttgtgaaactcaatagcggagatatctccaagaatgctgcagacaaactc
gcgcagctctgccatgctctggacagtcatgacttcggtgcagcccttcagctacaggta
cttctgacgaccagcgaatgggatgaatgcaacttctggctgtcgacgctaaagcggatg
atcaaggccaggcaaagtatgcggtga

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