Brassica rapa (field mustard): 103842338
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Entry
103842338 CDS
T03449
Name
(RefSeq) probable E3 ubiquitin ligase SUD1 isoform X1
KO
K10661
E3 ubiquitin-protein ligase MARCH6 [EC:
2.3.2.27
]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
103842338
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
brp04121
]
103842338
Enzymes [BR:
brp01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
103842338
Ubiquitin system [BR:
brp04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
March proteins
103842338
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MARCHF6_C
RINGv
zf-RING_2
zf-ANAPC11
Motif
Other DBs
NCBI-GeneID:
103842338
NCBI-ProteinID:
XP_009117224
LinkDB
All DBs
Position
A01:complement(2031188..2035586)
Genome browser
AA seq
1111 aa
AA seq
DB search
MEISSAESESLSISGGAAASSEAASESSVSSPSSSSLSASSQASPTAFSAVDPASLTATA
SRYVDDDEDEEDVCRICRNPGEADNPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVC
KHPFSFSPVYAENAPTRLPFQEFVVGIAMKACHVLQFFLRLSFVLSVWLLTIPFITFWIW
RLAFVRSFGEAQRLFLSHISTTVILTDCLHGFLLSASIVFIFLGATSLRDYFRHLRELGG
QDEREDEGERNGVRAARRPAGQGNRNLAGEGNVEDAGDQGAGVGQVNRRNPENVLARLDI
QAARLEAQVEQMFDGLDDADGAEDVPFDELVGMQGPVFHLVENAFTVLASNMIFLGVVIF
VPFTLGRVILYHLSWLFAAARGPALTASMHFIDSALENTTLKSALTSVSNLTNEGQENGL
LGQLSEMVKVNGSELNGANSTLSVAADLLKGSVTGSSKLSDVTTLTVGYMFIVLLVFLYL
GIIALIRYAKGEPLTVGRFYGIASMVEAVPSLLRQFLAAMRHLMTMIKVAFLLVIELGVF
PLMCGWWLDVCTVRMFGKTMSHRVQFLSISPLASSLVHWVVGIMYMLQISIFVSLLRGVL
RPGVLYFLRDPADPNYNPFRDLIDDPVHKHARRVLLSVAVYGSLIVMLVFLPVKLAIRMA
PSIFPLDISVSDPFTEIPADMLLFQICIPFIIEHFRLRTTIKSLLRCWFTAVGWALGLTD
FLLPRPEDNVGQDNGIGEPGRQNRAQVGGPDRAIAALPAADDPNRNLLRADNVNAGEEYE
DDEEQSDTDRYNFVIRIILLLLYAWVTLLLFNSALIVVPVSLGRALFSAIPVLPITHGIK
CNDLYAFVIGTYAFWTAISGGRYAIEHVKSRRTSVLLNQIWKWCGIVFKSSVLLAIWVFI
IPVLIGLLFELLVIVPMRVPVDESPVFLLYQDWALGLIFLKIWTRLVMLDHMLPIMDDSW
RAKFERVREDGFSRLQGLWVLREIVFPIVMKLLTALCVPYVLARGVFPMLGYPLVVNSAV
YRFAWIGCLSVSLFCFCAKRCHVWFRNLHNSIRDDRYLIGRRLHNFGEAALANQNLNQSS
EDAAGDGGVLIGREGDADTGLRLRRAIQQEA
NT seq
3336 nt
NT seq
+upstream
nt +downstream
nt
atggagatttcctctgctgaatccgaatcgctatccatctctggcggggcggccgcttct
tccgaggccgcatcggaatcgtcggtatcttctccctcatcctcctccctctccgcttcg
agccaggcctctcccaccgccttctccgccgtggatcccgcgtctttgacggctacagct
tccagatacgttgatgatgacgaagacgaggaggacgtttgcaggatctgcagaaacccg
ggggaagcggataatccgcttcggtacccgtgcgcttgcagcgggagcatcaagttcgtg
catcaggattgcctccttcagtggcttaatcatagcaacgctcgtcaatgcgaggtttgt
aagcatccgttttcgttctcaccagtgtatgctgagaatgctccaacgaggctccctttc
caggagtttgttgttgggatcgcgatgaaagcttgccacgtgttgcagttctttctccgg
ttgagtttcgtgctttccgtgtggcttctcaccattccctttattacgttttggatttgg
cggttggcttttgtgaggagctttggggaagctcagaggctgttcttaagccacatctct
accacagtgattctcaccgactgtttgcacgggttcttgctctcggctagcattgtcttc
attttcctcggggcgacttcgttgagggattactttaggcatttgcgggagttgggagga
caggatgagagagaagatgaaggggagaggaacggtgttcgtgctgcgaggagacctgct
gggcagggtaataggaaccttgctggagaggggaatgttgaagatgctggagatcagggt
gctggtgttggtcaggtcaatagaaggaatcctgaaaatgttctggcgaggttggatata
caagcggctcgtctcgaggctcaggttgaacaaatgtttgatggtttggatgacgctgat
ggtgctgaagatgttccgtttgatgagctggttggaatgcagggtccggtgtttcatttg
gttgagaatgcctttactgttctggcaagcaatatgatattccttggggttgtgatcttt
gtgcccttcacattaggacgggttatattgtatcatctgtcgtggctttttgctgctgct
agaggccctgccctgaccgcatcaatgcattttatagattcagcgttggaaaatacaact
ctgaagagtgcgttgacttctgtctcaaatttgactaacgagggccaagaaaatggactg
cttggtcagctctcagagatggtgaaagtcaacggaagtgaactgaacggggcaaacagt
actctatctgttgctgctgatctcttaaaaggttctgttacaggttcgtctaagctatct
gatgtgacaacgctgactgttgggtacatgtttattgtattgctggtgttcctttacctc
ggaatcattgcactgattcgttatgccaagggtgagccactgactgttgggagattttat
ggtatcgcttcaatggtagaagccgtaccatccctcctcagacagttcttggcagcaatg
aggcatctgatgactatgatcaaagttgcattccttttggtcatcgagcttggagtcttc
ccgctgatgtgtgggtggtggctagatgtttgcacggttaggatgtttggtaaaacaatg
tctcacagagtacagtttctatcaatttctccactggcaagctcacttgttcactgggtt
gttggaatcatgtacatgctgcagataagcatcttcgttagccttcttcgaggggttctt
cgccctggagtcttgtatttccttcgtgatcccgcagatcctaattataatccattccga
gatttgattgatgatccagtacacaagcatgctcggagggttttgttatctgttgcagtt
tacggtagtttgattgtcatgctggtatttttaccagtcaagctagctatccggatggct
ccttcaatcttcccgctcgacatatctgtatccgacccattcactgagattccggccgac
atgcttctgtttcaaatatgcataccatttatcatcgagcatttcagacttcggaccaca
atcaagtcccttctacgctgctggttcaccgccgtcggttgggcccttggtttgacagac
ttcctcttaccaagaccagaggacaacgttggtcaggacaatggaattggtgaaccagga
aggcagaacagagcacaggtcggtggacctgacagggccatagctgcgcttccagcagct
gatgaccctaacagaaatctcctccgtgctgataatgtcaacgccggtgaggaatatgaa
gatgatgaagaacaatctgatacagacaggtacaactttgtgatccggataatccttcta
ctactctatgcatgggttacacttcttctcttcaattcggcattaatagtcgtaccagtt
tctctcggacgtgctctgttcagtgccatcccagttctcccaataacgcatggcatcaaa
tgcaatgatttgtatgctttcgtaattggcacatatgccttttggactgccatatctggg
ggaaggtatgctatcgagcatgtcaagtcgaggaggacttcagtcttgcttaaccaaata
tggaaatggtgtgggattgtcttcaagagctcggtactattagccatatgggtttttatc
attccggtactaatcggacttctgtttgagcttttggtgatcgtcccaatgagagtccca
gtagatgaaagtcctgtcttccttctgtatcaagactgggctcttggcctcatctttttg
aagatctggactagactggtaatgttggatcatatgcttccgataatggatgatagctgg
agagcaaagtttgagagagtaagagaagatggattctcgaggcttcaaggtttgtgggta
ctgagagagattgtattccctatcgtgatgaagcttctgacagcattatgcgttccctac
gtcctggcgagaggagtgttcccgatgctcggctatccgctagttgtgaactcggcggtc
tacagattcgcttggataggttgtctctcggtgagcctcttctgcttttgtgcaaagaga
tgccatgtctggttcagaaaccttcacaactccatccgtgatgaccgttatctcattggt
cggaggctccataactttggggaagctgccttggctaaccaaaacttaaaccagagcagt
gaagatgctgcaggagatggtggggtcttgataggacgtgagggagatgctgatactgga
cttaggctcagacgtgctatccaacaagaagcttag
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