Brassica rapa (field mustard): 103843250
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Entry
103843250 CDS
T03449
Name
(RefSeq) katanin p80 WD40 repeat-containing subunit B1 homolog
KO
K18643
katanin p80 WD40 repeat-containing subunit B1
Organism
brp
Brassica rapa (field mustard)
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
brp04812
]
103843250
Cytoskeleton proteins [BR:
brp04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Microtubule severing proteins
103843250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
Katanin_con80
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_TEP1_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_C
ANAPC4_WD40
Beta-prop_EML
Beta-prop_DCAF4
Beta-prop_SCAP
WD40_MABP1-WDR62_1st
Beta-prop_EIPR1
Beta-prop_SPT8
Beta-prop_WDR75_1st
NBCH_WD40
eIF2A
WD40_RFWD3
WDR90_beta-prop_4th
Beta-prop_IFT140_1st
Beta-prop_IFT122_1st
Beta-prop_Vps41
Beta-prop_RIG_2nd
Beta-prop_HPS5
Beta-prop_WDR19_1st
Beta-prop_VPS8
VPS8_N
Ge1_WD40
Motif
Other DBs
NCBI-GeneID:
103843250
NCBI-ProteinID:
XP_009118199
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Position
A09:complement(42854647..42860419)
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AA seq
912 aa
AA seq
DB search
MAKRGYKLQEFLAHSANVNCLSIGKKTTRFLITGGDDCKVKLWSIGKSTSLTSLCGHTSP
IDSVTFNSEEALVLAGASSGVIKLWNLQEAKVVRGFTGHISNCSALEFHPFGQYLASGSS
DATLKIWDIRKKGCIQTYKGHTRGISTVKFTPDGRWLVSGGLDNVVKIWDITAGKLLHEF
KFHDGPIRSLDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEATGVRSIAFHPDGRT
LFCGLDDSLKVYSWEPVICRDSVEMGWSTLGDFCINENKFVGCSYYRNSVGIWVSDISKL
EPYGAGSEDENECMVKRFSVLDEQASERKGCGSRGSSSPDYETKEIKNIYVDSIGGTLKG
AIRASEKQNADDKSSRMHSVVDSDSGEESSHSRSESVASSKTNPGMMLRPAHVRKTLAKF
EESASVQYGTRKKSSQDIEEETQTRNAEDSTIKGIMYKFEKALSSEPPTDEATRMLHKPP
RVQRSSYNNNHNESRRAMSVDSATLNNSKGGLEYSGRNVEDTNDQHSSTKTERVLSPEKP
GDEQTIKVVSGRTRSLVERFERGEKITHTEEADNTNAVEQDPDKTSRQTGEAPVVVSTRR
ARSTPARVMPIVLNMKSDEPPSTQPARTSSVPVILNQSTNDEPSVSLTQSRTSPARTLPL
TLNQATHIVLSRRPRRTSSARVRPMSLSQAVSMTSHECSVTSTRPDRTSPARVTQMLATP
PTEIDQVADMAQDETHLSSQTDSDITENLMQTHEEFLSTLQSRLTKLQIVRHFWERSDVK
GAIGALRKLTDQSVQADVISILTDKIEILTLDMFSQLVPVLTSLLGSRTERPVNVSLDML
LKLVAVFGTVIRSTVTAPRIVGVDLHADERIQICQVCSAGLHKIQRILPILARRGGLITR
KAQELNLVLQQT
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagcgtggatacaagctgcaggagttcttggcacattcagcaaatgtgaattgt
ctaagtatcggaaagaagacaacacggttccttataaccggcggagatgactgcaaggtc
aaactctggtcaatcggcaagtctacctctctaacgagtctttgtggacatacaagccct
attgactcagtaactttcaactcggaagaagctttggtcctcgctggagcttcttccggt
gtgattaagctgtggaatctacaagaagcaaaggtggttcgaggttttactggacacata
tcaaactgttctgctcttgagtttcatccgtttggtcaataccttgcgtctggatctagt
gacgcaactctaaagatttgggatatcagaaagaaaggatgcatccaaacgtataaaggt
cacactcgtggcattagtactgtcaaatttactcctgatgggcgttggttagtgtctggt
ggacttgacaacgttgtaaagatttgggatataactgctggaaagctcttgcatgagttt
aagtttcatgatggacctatccgttccctagacttccaccctcttgagtttctcctagcc
actggttctgctgacaggactgtgaagttctgggatttagaaacgtttgaattgattgga
tctactagaccagaggccactggagttcgctcaattgcttttcatccagatggaagaacc
cttttctgtggattggatgatagcttgaaggtttattcatgggaaccagtgatatgccgg
gatagtgttgaaatgggatggtcaacccttggtgacttctgcatcaacgaaaacaagttc
gttggctgttcatattaccgaaactctgttgggatttgggtctcagatatatcgaaactt
gagccgtatggagctggatctgaggatgagaatgaatgcatggtgaaaagattcagtgtc
ttggatgagcaggcttctgagagaaaggggtgtggctcaaggggaagttcatccccggac
tatgagacaaaagagataaagaacatatacgttgactccataggtggaactttgaaaggg
gctattagggcgagcgagaagcagaatgcagatgacaagtcttcaagaatgcatagtgtt
gtggatagtgatagtggggaagaatcttctcattcaagaagtgaatctgtcgcttcctca
aaaactaatcccggaatgatgctaagaccagctcatgtaagaaagactctagcaaagttt
gaagaatcagcgtctgttcaatatggaactcggaagaaaagctcacaagatattgaagag
gagacacaaactcgaaatgctgaagactcaaccatcaaggggattatgtacaagtttgaa
aaagctttatcatccgaaccaccaactgatgaagcaactcgcatgctgcataagccacct
cgtgtacagaggtcatcctataacaacaaccacaatgagtcaagacgagcaatgtctgtt
gattcagcgactctcaacaacagcaaaggtgggttggagtactcaggtagaaacgttgag
gatacaaatgaccagcacagttccaccaaaactgaaagagttctttcaccagaaaagcct
ggtgatgaacagacaataaaagttgtctccgggagaacacgctcattagttgagaggttt
gagagaggagaaaaaattacccatacagaagaagcagataatactaatgcagtggagcaa
gatccggataagacatcaagacagacaggtgaagctcctgtggtagtatctacacggcga
gctagaagtactccagctcgagtgatgcctattgtactcaacatgaaatctgatgagcct
ccttcaacacaaccagctaggacttcttcagttccagtgatactcaaccagtctactaat
gatgagccttctgtatcattaacacaatctagaacctctccagcccggacattgcctttg
acactcaatcaggcaacacatattgttttgtcaagaagaccacgtaggacttcctcagct
cgagtaaggcctatgtcacttagtcaggcagtgagcatgacatctcatgagtgttctgta
acatcaacacgtccagataggacttcacctgcccgtgtaactcaaatgctggctacacca
cccactgagattgatcaggtggctgatatggctcaggatgagacacatttatcatcacaa
actgatagtgacatcactgagaatctaatgcaaactcatgaggagttcttaagcactctt
caatctagattgacaaagttacaaattgttaggcatttttgggaacgtagcgatgttaaa
ggggcaataggggctctgagaaagctgacagatcagtctgttcaagcagatgtgatcagt
attttaacagacaagatagagattcttacattggatatgttctctcaattggtccctgtc
cttacaagcttattgggtagcaggacagaaaggcctgttaatgtgtccttggacatgctc
ttgaagcttgtagcagtgttcggtacagttatacgctcaactgtcacagctccaaggata
gtcggcgttgatcttcatgcggatgaaaggatacaaatctgccaagtttgttctgcggga
ctgcacaagattcaaaggattcttccaattctcgcaagaagaggcggtctaataacaaga
aaggctcaagaactaaaccttgttcttcaacaaacatag
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